DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssh and epm2a

DIOPT Version :10

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_005170620.1 Gene:epm2a / 100535304 ZFINID:ZDB-GENE-100922-143 Length:322 Species:Danio rerio


Alignment Length:204 Identity:43/204 - (21%)
Similarity:74/204 - (36%) Gaps:62/204 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 TKIFEHVYLGS---EWNASNLEELQKNGVRHILNVTRE---IDNFF--------PGTFEYFNVRV 436
            :::...|:|||   ......|:..|:.||..::|...|   |:|..        |.|.|.. :.:
Zfish   141 SQVLPRVWLGSCPRRVEHVTLKLKQELGVTAVMNFQTEWDVINNSHGCRRDLSQPMTPETM-MHL 204

  Fly   437 YDDEKTNLLKYWDDTFRYITRAKAE---------------GSKVLVHCKMGVSRSASVVIAYAMK 486
            |.|  :.|...|..|....|..:.:               |..|.|||..||.||.:.|....|.
Zfish   205 YRD--SGLSYIWMPTQDMSTEGRIQMLPQAVFLLFGLLENGHSVYVHCNAGVGRSTAAVCGLLMY 267

  Fly   487 AYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNKEKLQRSKSETNLK--------- 542
            .:.|:.::....:..||:.:               .:|    :|.|.|::.:.::|         
Zfish   268 VFGWKLRKVQYFLTARRAAV---------------YID----EEALLRARDDFHMKFGQLCPSVR 313

  Fly   543 --STKDARL 549
              .|:|:.|
Zfish   314 NTETQDSTL 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 326..379 CDD:462592
DSP_slingshot 385..523 CDD:350363 35/165 (21%)
epm2aXP_005170620.1 CBM20_laforin 3..112 CDD:99881
DSP_laforin-like 138..294 CDD:350375 37/174 (21%)
Blue background indicates that the domain is not in the aligned region.

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