DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and ssh2

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_004911756.2 Gene:ssh2 / 100488169 XenbaseID:XB-GENE-993093 Length:1419 Species:Xenopus tropicalis


Alignment Length:1519 Identity:412/1519 - (27%)
Similarity:596/1519 - (39%) Gaps:464/1519 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CSLPDDILIFSLTPRDGESEDDEGNSKGNDRSECFFAGKGTALVLALKDIPPLTQSERRLSTDST 70
            |...:|..:|:.| .:.:|.::|..|:....||.|...||.||.|           .|...:.:.
 Frog    34 CCQYEDTELFNGT-NEADSGEEECRSQPRSISESFLTVKGAALFL-----------PRGNGSSTP 86

  Fly    71 RSSNSTQSNNSDIQLHLQSMFYLLQREDTLKMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRH 135
            |.|:....:..|:|.|||:||.||:.||.:::||||||...|||||:|:.|    .:|..|    
 Frog    87 RISHRRNKHAGDLQQHLQAMFTLLRPEDNIRLAVKLESTYQNRTRYMVVVS----TNGRQD---- 143

  Fly   136 RIMRHHSVKVGGSAGTKSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGME 200
                                                                           .|
 Frog   144 ---------------------------------------------------------------TE 145

  Fly   201 ESCLLGID--CNERT--TIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTL 261
            ||.:||:|  .|:.:  |:|||:|:.:||.|||||||||||....:.||||||||||||||||:|
 Frog   146 ESIVLGMDFASNDSSMCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWSALQSL 210

  Fly   262 HKVSKKARENNFYASGPSHDWLSSYERRIESDQSCLNEWNAMDALESRRPPSPDAIRNKPPEKEE 326
            ||..:.||.||:|.......|:|.||..|.|||..:||||||..::|.|..||....:.|.|:|.
 Frog   211 HKACEIARINNYYPGSLFLTWVSYYESHINSDQCSINEWNAMQDVQSHRSDSPVLFTDVPTERER 275

  Fly   327 TESVIKMKLKAIMMSVDLDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEH 391
            ||.:||.||:.|||..||:.:|||.||..||..:..:|.|:|.|||.||:|||||||:||:||:|
 Frog   276 TERLIKSKLREIMMQKDLENITSKEIRTELEMQMVCNLREFKEFIDNEMIVILGQMDSPTEIFDH 340

  Fly   392 VYLGSEWNASNLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYIT 456
            |:|||||||||||:||..|||:||||||||||||||.|||.|:||||:|.|:||.||:|||::|:
 Frog   341 VFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGLFEYHNIRVYDEEGTDLLAYWNDTFKFIS 405

  Fly   457 RAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSG 521
            :||..|||.|||||||||||||.|||||||.|.|...:|.::||:||:..|||.:|:.|||.|.|
 Frog   406 KAKKHGSKCLVHCKMGVSRSASTVIAYAMKEYGWNLDRAFDYVKERRTVTKPNPSFMKQLEEYQG 470

  Fly   522 MLDAMKNK-EKLQRSKSETNLKSTKDARLLPGSEPTPLIQALNQAKSKSTGEAGVTPDGEEEDGS 585
            :|.|.|.: .||.||.|:::|..        ..||... ..|..:|...|..|....|.......
 Frog   471 ILLASKQRHNKLWRSHSDSDLSD--------HHEPVGK-TGLEMSKKDITSSAEQLSDTHHSFSL 526

  Fly   586 RMHRR----------SIAQKSQRRM-------------------------VRRSSSTSPKTQTAV 615
            ..|..          ::..::|.|.                         .|..|..:......:
 Frog   527 GPHTENCNPDCPMDSTLYNETQARFEFTSCDFHTEQIEDILNLNTMNGCPSRCCSDDTILDNCRI 591

  Fly   616 VTKQQSQSMENLT-----PERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQ---------KHTP- 665
            |.|..:|:.|:.|     |:.::.:..|:...|..|..:        ||::         :.:| 
 Frog   592 VEKDLTQNPESFTVPGQLPDLTLEDMEKDALKPEVNCHH--------LHLEGLNSDFRDLQESPD 648

  Fly   666 -LSVRTRIHDLEAHRADQLPQQPVWTSLTKLI-TQTSHLGKSVSGSSSGNIDSRRDSSC------ 722
             ||:.::..:|...|.|.|      ::|.|.: ....:..:|.|.:.:..:.|.::|:.      
 Frog   649 QLSMTSQSEELNGDRIDFL------SALEKFVELSQENRPRSCSTTRADEVSSVKNSALKASWPE 707

  Fly   723 SDVFSSQVDSVFAKDEGEKRQRRKTHSWTESLGP---SGGIVLDPTPQQQKQQSNAILRPRGTRQ 784
            :.|:.|.||:.....:|...|..:..| |:...|   |..||.:|.|:...:.:.::        
 Frog   708 TPVYDSHVDNQRISSDGSTSQTSEDSS-TDEEQPKEISEQIVQEPLPKSHSENAISV-------- 763

  Fly   785 RELPSRHASWGSGDNRCCLPQRTSSGSYYDSNRNT-----------------------TAIFEGV 826
            :|:.:...|:..|..:|.....|.|.......|||                       :|:.:  
 Frog   764 KEIITEIESFNQGAGQCQQKPDTQSSQSQTPKRNTIHDLPHDFALDQENNHRQEPSDRSALLQ-- 826

  Fly   827 IQDLKRSSNCNVIEGVAVAVEPIVGVGE----------------GTVKRTKQKLEE--------- 866
             .|..|.|.....:|..|:.|......|                |:|:|...:|||         
 Frog   827 -NDKLRDSKVATWDGNPVSQENCENSNEANDYQELSSQAHKWCAGSVRRATLELEERLRQEQEQQ 890

  Fly   867 -STSLKKRCQEESQELLLEAVDAGQRRCPSLYRSASSAHSPRQRQPLRC------NSEE------ 918
             |.:|..|...::...:.:....|:.. .:|..||...|...::..|:.      ||.|      
 Frog   891 YSATLPTRKNSKNDSAVGDTAPKGKLE-DTLLDSAHGDHEKDRKNQLKIAESTEPNSSEPCADSS 954

  Fly   919 ---------LMH-----TSDIENKNTT------------------------------------PG 933
                     |:.     .|:|:.|.||                                    |.
 Frog   955 SSQISEPQCLLSKPESPVSEIKLKETTNEHGELHSLESVERKIEPIQLPKRIEIIEYSIGIKSPN 1019

  Fly   934 DHE-------ATVVLRVQGQTL----------------------------ADDQRISGNVQI--- 960
            |:|       ||:     |:.|                            ||...:|...::   
 Frog  1020 DNELSQCEDGATL-----GEVLIETKTSMILSPEMPFKEIPETETDNSLHADSLHLSETCELGSP 1079

  Fly   961 -----LKQNFEAKAGVVGTGGGGGGGTAAGSGSSSTI------ATSVSAVAGACSANPGKKTTSH 1014
                 |....|....|.........|.:......||:      :.|::.|...||:     |...
 Frog  1080 SVSFSLTSQCEEHNSVNIPVPSACTGPSMQPDLLSTLYPYTQGSISLTGVTEECSS-----TDED 1139

  Fly  1015 QSLPSSPVAQHANHVSAASNSNSSASNSSDSSVSENCDRNVK----------------------- 1056
            .|.|.|  ...:.|..|..:.|......:||::|:....::.                       
 Frog  1140 FSKPFS--CTESYHTDAFEDFNEMMHRETDSALSQCSSEDLNLISTVSANILEIREVLDIPPLSF 1202

  Fly  1057 GLVHKYQTTTSCSSQAAATPTVAC-------APLPPAG--TASNISHSCSTTTTTSFKQRPLSYY 1112
            |..|  .::|.......:.|.|..       |.:..||  |.|.:..|.|.......:.......
 Frog  1203 GFAH--SSSTDSIKDLGSNPGVVKQKAKEIEARIRQAGLTTPSQMKRSASLAKLGCLELSKDDLS 1265

  Fly  1113 DRSLSNRSTHDYSD--------------------SRPPPAPVRV----SHSSNVQHQQQQ----- 1148
            :|...:..:..|.|                    |:.||..:.:    ..|...:|..:|     
 Frog  1266 ERESVSSDSQTYPDLLLSSLRVVPGSFEISPDIKSQDPPEKLCILSTQVESEPTKHFVEQIKTEE 1330

  Fly  1149 ----------------------QQQLQPEQHQQ--------------------QVQIRRLAQHGK 1171
                                  ||.|.|....:                    .|.|....:||:
 Frog  1331 CVVQSKPVEKPLVQFAKDFDSTQQGLSPSSESELTVSEGGSPMQSLVLGTSVPLVSISPKHEHGR 1395

  Fly  1172 THPLSRL--SAPKTGFNTAAYNTM 1193
            ||||.||  :..|.......||||
 Frog  1396 THPLRRLKKTNEKKRTTNPLYNTM 1419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 105/295 (36%)
DEK_C 328..379 CDD:285919 26/50 (52%)
DSPc 385..519 CDD:238073 93/133 (70%)
ssh2XP_004911756.2 SSH-N 43..262 CDD:212166 107/301 (36%)
DEK_C 276..328 CDD:400903 27/51 (53%)
DSP_slingshot_2 331..474 CDD:350417 98/142 (69%)
MDN1 <634..974 CDD:227596 63/358 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2986
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 473 1.000 Inparanoid score I1464
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49159
Panther 1 1.100 - - LDO PTHR45864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 1 1.000 - - X2719
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.100

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