DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssh and si:ch211-223p8.8

DIOPT Version :10

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001139098.1 Gene:si:ch211-223p8.8 / 100004731 ZFINID:ZDB-GENE-090313-91 Length:186 Species:Danio rerio


Alignment Length:186 Identity:55/186 - (29%)
Similarity:97/186 - (52%) Gaps:17/186 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 EEILDMDLGEYKSFIDAEMLVILGQMDA--PTKIFEHVYLGSEWNASNLEELQKNGVRHILNVT- 418
            ::|||..|.:..:..:.|.::..||:..  ..:::.:::||..:.:.:...|...||.|:||.. 
Zfish     5 DQILDNVLHKSPTIEELEGILHGGQLSCNHVDEVWPNLFLGDMYMSHDRYGLWSLGVTHVLNAAH 69

  Fly   419 -----REIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRA-KAEGSKVLVHCKMGVSRSA 477
                 :..|:::..|.:|:.|...|....::..::..:.:||..| ...|:||.|||.:|:||||
Zfish    70 GKMCCKGNDDYYGTTVKYYGVPANDLPTFDISPFFYPSAQYIHDALSTTGAKVFVHCAVGMSRSA 134

  Fly   478 SVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNKEKLQ 533
            ::|:||.|....:....|:..||:|| .|.||:.||.||.|       :.|:.|||
Zfish   135 ALVLAYLMIYCNFSLVDAILKVKERR-WIFPNRGFLKQLIT-------LDNELKLQ 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 326..379 CDD:462592 5/21 (24%)
DSP_slingshot 385..523 CDD:350363 44/144 (31%)
si:ch211-223p8.8NP_001139098.1 DUSP13A 35..179 CDD:350428 45/151 (30%)
Blue background indicates that the domain is not in the aligned region.

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