DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-2 and PAP2

DIOPT Version :9

Sequence 1:NP_001262941.1 Gene:Trf4-2 / 42983 FlyBaseID:FBgn0039251 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_014526.1 Gene:PAP2 / 854034 SGDID:S000005475 Length:584 Species:Saccharomyces cerevisiae


Alignment Length:400 Identity:107/400 - (26%)
Similarity:184/400 - (46%) Gaps:72/400 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 EIEQFYNYIRSTPTEFCLRAGAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFW 95
            ||:.|..||..:..|..:|...:..|.:.|..:||.|.:.:|||:.|.|.||.||||.||..:..
Yeast   182 EIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELG 246

  Fly    96 NPRL---LHELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASGVQAADLI 157
            ....   |:.|.:.|..:.:.  ..|.|:.||.||::||.:..|.|..||:|.. .:|::||.||
Yeast   247 GKESRNNLYSLASHLKKKNLA--TEVEVVAKARVPIIKFVEPHSGIHIDVSFER-TNGIEAAKLI 308

  Fly   158 KDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLMVISFLQQHAR-SNRRLSEHSKL 221
            ::::...|.|.:||:::||||.....|.|: :||:..:::..:|.|||..|.| ....:.....|
Yeast   309 REWLDDTPGLRELVLIVKQFLHARRLNNVH-TGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNL 372

  Fly   222 ALLLIQFLDYYGRKFDFFKYGISVLGQGGCVEKARLRSTLG------ENNWQSV--------LCI 272
            .:|||:|.:.||:.|.:              :...|.|:.|      ::.|.::        |.|
Yeast   373 GVLLIEFFELYGKNFGY--------------DDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAI 423

  Fly   273 EDPVTPTNDIGRSSYGVLGVMQGFGAAFVKL-SKLVDSDSS----KIVGPILANIVE-------- 324
            :||...:|:|.|.|:.:..:.:.|..||..| ::..:..|:    ::...||.|:::        
Yeast   424 QDPGDESNNISRGSFNIRDIKKAFAGAFDLLTNRCFELHSATFKDRLGKSILGNVIKYRGKARDF 488

  Fly   325 -------VPQSII---NYRAWVHYNFQHLLTPELPCADSLVQPSPTGS--------TSPSASASA 371
                   :.::||   ||    |.....::..| ..|:..|..:.|.:        |:|.|..:.
Yeast   489 KDERGLVLNKAIIENENY----HKKRSRIIHDE-DFAEDTVTSTATATTTDDDYEITNPPAKKAK 548

  Fly   372 SEDERSGGPA 381
            .|::....||
Yeast   549 IEEKPESEPA 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-2NP_001262941.1 NT_PAP_TUTase 52..161 CDD:143392 39/111 (35%)
PAP_assoc 221..280 CDD:281779 16/72 (22%)
PAP2NP_014526.1 TRF4 116..584 CDD:227585 106/399 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343817
Domainoid 1 1.000 62 1.000 Domainoid score I2480
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.831874 Normalized mean entropy S2207
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002099
OrthoInspector 1 1.000 - - mtm9197
orthoMCL 1 0.900 - - OOG6_101092
Panther 1 1.100 - - O PTHR23092
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2219
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.680

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