DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-2 and tent4b

DIOPT Version :9

Sequence 1:NP_001262941.1 Gene:Trf4-2 / 42983 FlyBaseID:FBgn0039251 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_004913600.1 Gene:tent4b / 100491336 XenbaseID:XB-GENE-990067 Length:660 Species:Xenopus tropicalis


Alignment Length:410 Identity:155/410 - (37%)
Similarity:221/410 - (53%) Gaps:61/410 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PWQ---LPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRAGAVRRIEDVVLSIWPSASVDL 71
            ||:   ..:.|.|        ||:||..||.|:...|.|..:|...|.|||:|:..:||:|.|.:
 Frog   143 PWKTRTYSEEVIG--------LHEEIMDFYKYMSPRPEEEKMRMEVVNRIENVIKELWPNADVQI 199

  Fly    72 FGSFRTGLNLPDSDIDLVVYYKFWNPRLLHELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLIS 136
            ||||:|||.||.|||||||:.| |....|..|:..|....|.|.::|.|||||:||::|.||..:
 Frog   200 FGSFKTGLYLPTSDIDLVVFGK-WENLPLWTLEEALRKHKVADENSVKVLDKATVPIIKLTDSFT 263

  Fly   137 RIRFDVTFNSVASGVQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLMV 201
            .::.|::|| |.:||:||.||||||:.:|.||.||:||||||.....|||: :||:.||:|.||.
 Frog   264 EVKVDISFN-VQNGVKAAQLIKDFIKKYPVLPYLVLVLKQFLLQRDLNEVF-TGGIGSYSLFLMA 326

  Fly   202 ISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGGCVEKARLRSTLGENNW 266
            :||||.|.|.: ..|..:...:|||:|.:.|||.|::.|.||.:...|..|.|..::..:.:...
 Frog   327 VSFLQLHPRED-ACSLDANYGVLLIEFFELYGRHFNYVKTGIRIKEGGSYVAKDEVQKNMLDGYR 390

  Fly   267 QSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAFVKLSKLV--------DSDSSKIVGPILANIV 323
            .|:|.||||:.|.||:||||||.:.|.|.|..|:|.||..|        ::::..|:|    .|:
 Frog   391 PSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKFYPNNETESILG----RII 451

  Fly   324 EVPQSIINYRAWVH------------YNFQHLLTPELPCADSLVQPSPTGS-------------- 362
            .|.|.::.||.|:.            ||...:....|...::.|....|.|              
 Frog   452 RVTQEVVTYREWISKHWGQKMKSESAYNGNEVTLINLDKCNNNVTEENTNSGQVKNKISETLCKH 516

  Fly   363 --------TSPSASASASED 374
                    :|.|::.|:|.|
 Frog   517 SSNSSGPLSSSSSTLSSSSD 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-2NP_001262941.1 NT_PAP_TUTase 52..161 CDD:143392 55/108 (51%)
PAP_assoc 221..280 CDD:281779 21/58 (36%)
tent4bXP_004913600.1 TRF4 149..>428 CDD:227585 131/290 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016712at2759
OrthoFinder 1 1.000 - - FOG0002099
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23092
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2219
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

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