DRSC/TRiP Functional Genomics Resources

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Protein Alignment PIG-S and pigs

DIOPT Version :9

Sequence 1:NP_733060.1 Gene:PIG-S / 42979 FlyBaseID:FBgn0265190 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001070082.1 Gene:pigs / 767675 ZFINID:ZDB-GENE-060929-436 Length:566 Species:Danio rerio


Alignment Length:564 Identity:167/564 - (29%)
Similarity:266/564 - (47%) Gaps:71/564 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 ATLAFIVVIIGIGVPMWWRTTTVYRVNLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQ 89
            |.||...|:|.:|:|:||:||..||..||.::|..|..:.::.:|.:.:.   .||| .|..|.|
Zfish    19 AALAIAAVVIIVGIPLWWKTTETYRAWLPFSDINELDSLQLRLSVDIEVV---FSRG-TLTPEQQ 79

  Fly    90 NAFSDNEI--------------WSVEFKQLSPTPMTQEA-HTPAALE-----KLLLENHVQSVGD 134
            .....:.:              :..|.:..:.|.|.::| :.|.|.|     ..|.|:...||..
Zfish    80 KKIPLSHVNEKEHQVDAKTGLRYQYETRYRTATVMEEDALNQPTAAEADLSLHTLTESSCGSVVV 144

  Fly   135 FMFIEWPKLQEE---LLLTTERSALMRSDTPSNKIAQLLHAKILQ-TYRINQILST--------- 186
            ::..|...|..|   :.:...|:||:||  |..|.:..|:..|.. ..|:.||.||         
Zfish   145 YVIPESSVLLPEDVKVYVGQRRTALLRS--PPFKSSWSLNEVISNLNPRVEQIASTMSFSHQDIT 207

  Fly   187 ------------------DERMGAKSEAPQPAYDVIVSVLNPKPRLTHAKWNIAMAVKTYIEPWL 233
                              |.....||   .|.|::..|:|||.|:.....|:|..|:.:||:|.|
Zfish   208 AALSDRVRMTKVTKESMADSMRAIKS---SPGYEITFSLLNPDPKSHSLHWDIEGALHSYIQPLL 269

  Fly   234 AKVSGVSNYTVRSQWKYRVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNL-SASTTDKP 297
            .|::.::|::|.||..|...:..:.:.....|.    |.|...:|.|::..:...| |.:.:..|
Zfish   270 NKLAPIANFSVDSQILYYAVLGVNPRFDNSVSA----YTLNADSLSHVINPVEARLGSNAASSNP 330

  Fly   298 AINLVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCLAAMSDQEAVPYH 362
            .:|.::|:|..|.:||.|.:...:.:..|   ||.||.|||.::.|..:   |.....:..|...
Zfish   331 VLNFLLYVPDAHHSPLFIRDHSRREVPTN---AFHSPRWGGIMVYNVND---LYGPESERPVDIS 389

  Fly   363 VSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLEPRRWEYEAYLRRSAIRHISTASSTLQS 427
            ::....|.|.|.||..:|.:.......|..:..........||.:..:...::.:|:|||:|:.|
Zfish   390 INMAKVMGVFLAQLRLMLGVHQTHPPSGFVLQSPGSAGLADWELDRLMWSRSVENIATASTTITS 454

  Fly   428 LIKLLDQISYIVIDDEVGAAITNSYADILAAKAALLEHRLADASVLAKRAFVASERGFFDASLLA 492
            |.:|||||..|||:|.:...::::...:.||.|.|....|..|...::.|.:||||.|||.|||.
Zfish   455 LAQLLDQIGNIVINDNIALQVSSAVTSLQAAVAELDAGNLVFALQYSREAILASERAFFDPSLLH 519

  Fly   493 QLYFPDEQKYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQS 536
            .|||||:||:|||||||||:.||::.|...:...::.||.|||:
Zfish   520 LLYFPDDQKFAIYIPLFLPMCVPIVLSLLKIVSEVKKRRAEKQA 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PIG-SNP_733060.1 PIG-S 28..521 CDD:287481 160/544 (29%)
pigsNP_001070082.1 PIG-S 31..557 CDD:287481 157/544 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577991
Domainoid 1 1.000 201 1.000 Domainoid score I2973
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41963
Inparanoid 1 1.050 212 1.000 Inparanoid score I3628
OMA 1 1.010 - - QHG46691
OrthoDB 1 1.010 - - D1399804at2759
OrthoFinder 1 1.000 - - FOG0004772
OrthoInspector 1 1.000 - - oto39585
orthoMCL 1 0.900 - - OOG6_103860
Panther 1 1.100 - - LDO PTHR21072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R923
SonicParanoid 1 1.000 - - X3925
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.940

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