DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PIG-S and Pigs

DIOPT Version :9

Sequence 1:NP_733060.1 Gene:PIG-S / 42979 FlyBaseID:FBgn0265190 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_958808.1 Gene:Pigs / 276846 MGIID:2687325 Length:555 Species:Mus musculus


Alignment Length:579 Identity:164/579 - (28%)
Similarity:261/579 - (45%) Gaps:122/579 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 ATLAFIVVIIGIGVPMWWRTTTVYRVNLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQ 89
            :.|.|..|.|.:|:|:||:||..||..||.::|..|:.:.::..|.|.:                
Mouse    19 SALFFAAVAILLGLPLWWKTTETYRAPLPYSDISGLNALLLRLMVPVTV---------------- 67

  Fly    90 NAFSDNEIWSVEFKQLSPTPMTQEAHTP----------------AALEKLLLENHVQSVG----- 133
             .|:.:.: .::.::..|..:..|...|                .|||.   |....|:|     
Mouse    68 -VFTRDSV-PLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALEH---EEEALSLGSVHEA 127

  Fly   134 DFMFIEWPKLQEELLLT----TERSALMRSDTPS-------NKIAQLLHAKILQTY--RINQIL- 184
            :.|..| |:.|.|..||    :|.|:|:..|..|       ..:..|:|.:.....  ||.|:. 
Mouse   128 EAMLAE-PEKQAEGSLTVYVISEHSSLLPQDMMSYIGPERTAVVRGLIHREAFNIIGRRIVQVAQ 191

  Fly   185 ----------------------STDERMGAKSEAPQPAYDVIVSVLNPKPRLTHAKWNIAMAVKT 227
                                  |:|:|...||..   .|::..|:|||.|:.....|:|..||:.
Mouse   192 AMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSL---GYEITFSLLNPDPKSHDVHWDIEGAVQR 253

  Fly   228 YIEPWLAKVSGVSNYTVRSQWKYRVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSAS 292
            :::|:|.::|...|::|.||..|...:..:.:.....|.    |:|...:|||::..:...|.:|
Mouse   254 FVQPFLNRLSVAGNFSVDSQILYYAMLGVNPRFDPASSS----YSLAMHSLPHVINPVESRLGSS 314

  Fly   293 TTD-KPAINLVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCLAAMSDQ 356
            ... .|.::.::|:|....:||:|.:.....:..|   ||.||.|||.::.|....:..|:   :
Mouse   315 AASLYPVLHFLLYVPELAHSPLYIQDKDGAPVATN---AFHSPRWGGIMVYNVDPKIYNAS---E 373

  Fly   357 EAVPYHVSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLEPR------------RWEYEAY 409
            ..|...|.....|:|.|.||..|..|:.            .|:.|:            .||.:..
Mouse   374 LPVRVEVDMVRVMEVFLAQLRLLFGIAQ------------PQVPPKCLLSGPKSEGLMTWELDRL 426

  Fly   410 LRRSAIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITNSYADI-LAAKAALLEHRLADASVL 473
            |...::.:::||::||.||.:||.:||.|||.|:|.:.:..:.|.: .||||..|.| |:.|...
Mouse   427 LWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGH-LSSAFAA 490

  Fly   474 AKRAFVASERGFFDASLLAQLYFPDEQKYAIYIPLFLPIMVPVLSSFNMLRGVLQARRK 532
            ::.|..:|||.|||.|||..|||||:||:|||||||||:.||:|.|   |..:.|..||
Mouse   491 SQEAVTSSERAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLS---LVKIFQETRK 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PIG-SNP_733060.1 PIG-S 28..521 CDD:287481 159/563 (28%)
PigsNP_958808.1 PIG-S 22..546 CDD:287481 161/574 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834917
Domainoid 1 1.000 182 1.000 Domainoid score I3457
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41963
Inparanoid 1 1.050 183 1.000 Inparanoid score I3956
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46691
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004772
OrthoInspector 1 1.000 - - oto92433
orthoMCL 1 0.900 - - OOG6_103860
Panther 1 1.100 - - LDO PTHR21072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R923
SonicParanoid 1 1.000 - - X3925
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.930

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