DRSC/TRiP Functional Genomics Resources

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Protein Alignment PIG-S and pigs

DIOPT Version :9

Sequence 1:NP_733060.1 Gene:PIG-S / 42979 FlyBaseID:FBgn0265190 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001106424.1 Gene:pigs / 100127592 XenbaseID:XB-GENE-1005014 Length:564 Species:Xenopus tropicalis


Alignment Length:578 Identity:167/578 - (28%)
Similarity:263/578 - (45%) Gaps:102/578 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RIGATLAFIVVIIGIGVPMWWRTTTVYRVNLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIA 86
            ::..::|.|..::|:  |:||:||..||.:||.::|..|..:.:...|.:.|...:.:    |.|
 Frog    18 KVAISIALITAVLGL--PLWWKTTETYRASLPYSDIRGLETLQLHLTVPIEIIFGKAT----LTA 76

  Fly    87 ELQNAFSDNEIWSVEFKQLSPTPMTQE-----AHTPAALEKLL-------LENHVQSVGD----- 134
            |.|.......:...|....:.|.:|:.     ..|....|:.|       ..|.:|.:|:     
 Frog    77 EQQRNIPSTGLKETETVLNAQTSITRHYEFKYRRTSVDEEEALGLKSLQDANNALQKLGETAQGS 141

  Fly   135 -FMFIEWPKLQEELLLTTE---------RSALMR----SDTPSNKIAQLLHAKILQTYRINQILS 185
             .:||    |.|..:|..:         |.||:|    ....|..||..::.|:  .:.|..:..
 Frog   142 ITIFI----LPESSVLLPKGIRVYIGKHRIALVRCALSPSLGSEDIANTVYKKV--EHVIQTMSF 200

  Fly   186 TDE-----------------------RMGAKSEAPQPAYDVIVSVLNPKPRLTHAKWNIAMAVKT 227
            |||                       |...||.|   .|::..|:|||.|:.....|||:.|...
 Frog   201 TDEAVTAALSDRIPIGKFSKEDFENSRRAFKSSA---GYEITFSLLNPDPKSHDLNWNISSASDQ 262

  Fly   228 YIEPWLAKVSGVSNYTVRSQWKYRVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSAS 292
            ||:|:|.|:..|:|:::.||..|...:....:..:..|.    |.|....|||::..:...|.:|
 Frog   263 YIQPFLDKLQNVANFSMDSQTLYYAMLGVTPRFEKSTSS----YILNLHNLPHVINPVEARLGSS 323

  Fly   293 TTD-KPAINLVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCLAAMSDQ 356
            ... .|.:|.::|:|....:||:|.:....|:..|   ||.||.|||.:|.|    |....:.:.
 Frog   324 AASLYPVLNFLLYVPEYSHSPLYIQDKDGSRIPTN---AFHSPRWGGIMIYN----VDYGNLGEL 381

  Fly   357 EAVPYH--VSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLEP------RRWEYEAYLRRS 413
            : .|.|  :.....|:|.|.||..||.|:.      ..|.:..|||.      ..||.:..|...
 Frog   382 Q-FPVHIDIDMVRVMEVFLTQLRLLLGITK------ATVPEDYQLESPGNEGLTDWELDRLLWSR 439

  Fly   414 AIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITNSYADILAAKAALLEHRLADASVLAKRAF 478
            .:.:|:|.::||.||.:|||||..|||:|.|.:.:.::.:.:..|.:.|...||..|...:|.|.
 Frog   440 VVENIATVTTTLTSLAQLLDQIGNIVINDIVASEVYHAVSSVQTALSELEAGRLESAFQASKEAI 504

  Fly   479 VASERGFFDASLLAQLYFPDEQKYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQS 536
            .:||:.|||.|||..|||||:||:|||||||||:.||:..|      :::..::.|||
 Frog   505 SSSEKAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPIFLS------LIKIAKEYKQS 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PIG-SNP_733060.1 PIG-S 28..521 CDD:287481 164/555 (30%)
pigsNP_001106424.1 PIG-S 22..555 CDD:313690 164/571 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 189 1.000 Domainoid score I3236
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41963
Inparanoid 1 1.050 192 1.000 Inparanoid score I3741
OMA 1 1.010 - - QHG46691
OrthoDB 1 1.010 - - D1399804at2759
OrthoFinder 1 1.000 - - FOG0004772
OrthoInspector 1 1.000 - - oto102737
Panther 1 1.100 - - LDO PTHR21072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R923
SonicParanoid 1 1.000 - - X3925
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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