DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycB3 and CYCA1;2

DIOPT Version :9

Sequence 1:NP_001262934.1 Gene:CycB3 / 42971 FlyBaseID:FBgn0015625 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_177863.2 Gene:CYCA1;2 / 844075 AraportID:AT1G77390 Length:442 Species:Arabidopsis thaliana


Alignment Length:543 Identity:151/543 - (27%)
Similarity:231/543 - (42%) Gaps:136/543 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 MQTRAKRKADHSPIKNDKI------------KRSALGNLTNNVKIMTLHPAQDEEQSGVGKKPTA 107
            |.:.::..:..:||....:            :|:.||::||                        
plant     1 MSSSSRNLSQENPIPRPNLAKTRTSLRDVGNRRAPLGDITN------------------------ 41

  Fly   108 QQLQALMDAKKQENLSVNVFGASKMTTRASSKVEDSVENCHKVLDKLEEALARPKPRPKAVPAAK 172
                       |:|.|.|...:|.:.            ||       ...:.:.|..||      
plant    42 -----------QKNGSRNPSPSSTLV------------NC-------SNKIGQSKKAPK------ 70

  Fly   173 KTVLGEVQLPAMPNPMQIPVL---LPPTHNLAAPQVAAVKPVRRISNDFNKTEDSLYMSALEDVS 234
                     ||:.....:.:|   |||..|..:..:...:....:.:|     |||.        
plant    71 ---------PALSRNWNLGILDSGLPPKPNAKSNIIVPYEDTELLQSD-----DSLL-------- 113

  Fly   235 SCDSMRLSGNFEAARRRSAKLQQKTEQQPQPLLLTLPETAPSQVVP--IPPVPEEVEDFDRK--- 294
             |.|..||  .:|:         .|:..|.   ::..::..:.||.  :....::..|.|..   
plant   114 -CSSPALS--LDAS---------PTQSDPS---ISTHDSLTNHVVDYMVESTTDDGNDDDDDEIV 163

  Fly   295 NWD----DPFQVSHYAMDIFNYLKVREA-EFPIADYMPR-QIHLTTWMRTLLVDWMVEVQETFEL 353
            |.|    ||...:.:|.||:.:|:|.|. :.|..|||.| |..:...||::|:||:|||.|.:.|
plant   164 NIDSDLMDPQLCASFACDIYEHLRVSEVNKRPALDYMERTQSSINASMRSILIDWLVEVAEEYRL 228

  Fly   354 NHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPPLIEDFLYICDGAYNHDELV 418
            :.|||||||..||.||....|||:.|||||.....||.||:|...|.:|||.||.|..|..:||:
plant   229 SPETLYLAVNYVDRYLTGNAINKQNLQLLGVTCMMIAAKYEEVCVPQVEDFCYITDNTYLRNELL 293

  Fly   419 RMERETLRVIKYDLGIPLSYRFLRRYARCA--KVPMPTL---TLARYILELSLMDYANISFSDSQ 478
            .||...|..:|::|..|.:..||||:.|.|  :..:|:|   .||.|:.||||:|||.:.::.|.
plant   294 EMESSVLNYLKFELTTPTAKCFLRRFLRAAQGRKEVPSLLSECLACYLTELSLLDYAMLRYAPSL 358

  Fly   479 MASAALFMA-LRMHGGPGQLDKQTWTSTLIYYTGYQLADFAEIVTALNAGLHRKPRATIKTIRNK 542
            :|::|:|:| ..:|.     .::.|.:||.:||.|:.......|..|....:.|..:.:..||.|
plant   359 VAASAVFLAQYTLHP-----SRKPWNATLEHYTSYRAKHMEACVKNLLQLCNEKLSSDVVAIRKK 418

  Fly   543 YSHKIFHEVAK--VPLLTNQELF 563
            ||...:...||  .|....||||
plant   419 YSQHKYKFAAKKLCPTSLPQELF 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycB3NP_001262934.1 Cyclin_N 308..433 CDD:278560 59/126 (47%)
Cyclin_C 435..555 CDD:281044 41/127 (32%)
CYCA1;2NP_177863.2 CYCLIN_AtCycA_like_rpt1 171..306 CDD:410265 62/134 (46%)
CYCLIN_AtCycA-like_rpt2 310..424 CDD:410210 39/118 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2906
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10177
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X94
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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