DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycB3 and ccne1

DIOPT Version :9

Sequence 1:NP_001262934.1 Gene:CycB3 / 42971 FlyBaseID:FBgn0015625 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001016328.1 Gene:ccne1 / 549082 XenbaseID:XB-GENE-972042 Length:408 Species:Xenopus tropicalis


Alignment Length:340 Identity:77/340 - (22%)
Similarity:135/340 - (39%) Gaps:71/340 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 LPAMPNPMQIPVLLPPTHNLAAPQVAAVKPVRRIS----NDFNKTEDSLYMSALEDVSSCDSMRL 241
            :|.:.||               |.....|...|.|    :...|.:.::|:...::...|..|..
 Frog     1 MPVISNP---------------PVEKGTKGEERASCSVRSRKRKADVAIYLQDPDETLDCLEMTK 50

  Fly   242 SGNF--------EAARRRSAKL-----QQKTEQQP--QPLLLTLPETAPSQVVPIPPVPEEVEDF 291
            ...:        |...:...||     :::.||.|  .|...:| ..:|..|.|:|         
 Frog    51 KKQYQDRGPWSNEMICKSPHKLIPTPEKEEHEQNPTSYPHFASL-RFSPVSVSPLP--------- 105

  Fly   292 DRKNW---DDPFQVSHYAMDIFNYLKVREAEFPIADYMPRQIHLTTWMRTLLVDWMVEVQETFEL 353
             |..|   ||.::         |.|..........::..:...|...||.:|:||::||.|.::|
 Frog   106 -RLGWANQDDVWR---------NMLNKDRTYLRDKNFFQKHPQLQPNMRAILLDWLMEVCEVYKL 160

  Fly   354 NHETLYLAVKIVDLYLC--REVINKEKLQLLGAAAFFIACKYDERQPPLIEDFLYICDGAYNHDE 416
            :.||.||.....|.::.  :.|| |.:|||:|....|||.|.:|..||.:..|.:|.|||...||
 Frog   161 HRETFYLGQDFFDRFMATQKNVI-KSRLQLIGITFLFIAAKLEEIYPPKLHQFAFITDGACTEDE 224

  Fly   417 LVRMERETLRVIKYDL---------GIPLSYRFLR--RYARCAKVPMPTLTLARYILELSLMDYA 470
            :..||...::.:.:.|         .:.|...::|  ::....:.|.........:|:|.::|..
 Frog   225 ITSMELIIMKDLDWCLSPMTVVSWFNVFLQVAYIRELQHFLLPQFPQEVYIQIVQLLDLCVLDIC 289

  Fly   471 NISFSDSQMASAALF 485
            .:.:....:|::||:
 Frog   290 CLEYPYGVLAASALY 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycB3NP_001262934.1 Cyclin_N 308..433 CDD:278560 41/135 (30%)
Cyclin_C 435..555 CDD:281044 9/53 (17%)
ccne1NP_001016328.1 Cyclin_N 114..241 CDD:278560 41/136 (30%)
Cyclin_C <280..>340 CDD:281044 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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