back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH4 and Car13

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_078771.1	Gene:	Car13 / 71934	MGIID:	1931322	Length:	262	Species:	Mus musculus

Alignment Length:	261	Identity:	77/261 - (29%)
Similarity:	107/261 - (40%)	Gaps:	59/261 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    16 RSHFGFNYDKQGRDWN----VKCGERQSPIALWSCNAITCNVPKLKFLNYHKSLCDPLSVINNGL 76
            |..:|:........||    :..|::||||.:           |.|.:.|..|| .|||:..:..
Mouse     3 RLSWGYGEHNGPIHWNELFPIADGDQQSPIEI-----------KTKEVKYDSSL-RPLSIKYDPA 55

  Fly    77 TVLMRIPKTVDGSRPSLCI---STEGQQV---------FEADQLHFHWGSALSKGSEHCLDGNYY 129
            :.     |.:..|..|..:   .||.:.|         :...|.|.|||||...||||.:||..|
Mouse    56 SA-----KIISNSGHSFNVDFDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRY 115

  Fly   130 DGEVHIVHKNA-SYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSI-------- 185
            ..|:|:||.|: .|.|..||..:.:|.|||.:|::..|    ..|.:..|...:.||
Mouse   116 AAELHVVHWNSDKYPSFVEAAHESDGLAVLGVFLQIGE----HNPQLQKITDILDSIKEKGKQTR 176

  Fly   186 -TKLDDSCPLEDSMALQDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQ 249
             |..|..|.|..|.            .|:||.||||.||..|:|.|.|...|:.:..:....|..
Mouse   177 FTNFDPLCLLPSSW------------DYWTYPGSLTVPPLLESVTWIVLKQPISISSQQLARFRS 229

  Fly   250 L 250
            |
Mouse   230 L 230

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.