DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH4 and ca12

DIOPT Version :9

Sequence 1:NP_651298.1 Gene:CAH4 / 42965 FlyBaseID:FBgn0039235 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_001016431.1 Gene:ca12 / 549185 XenbaseID:XB-GENE-1015246 Length:335 Species:Xenopus tropicalis


Alignment Length:292 Identity:85/292 - (29%)
Similarity:132/292 - (45%) Gaps:40/292 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFLVARSFAPINSGTRSHFGFNY--DKQGRDW--NVK-C-GERQSPIAL-WSCNAITCNVPKLKF 58
            :.||..:.....:.:..| |:.|  .|..:.|  |.: | |..||||.: ........::..:|.
 Frog     4 LLLVLLALPSCQAASEGH-GWAYIGTKGEKSWPKNYEFCGGVYQSPIDIHQDILQYDSSLQPVKL 67

  Fly    59 LNYHKSLCDPLSVINNGLTVLMRIPKTVDGSRPSLCISTEGQQV------FEADQLHFHWGS-AL 116
            ..|:.|..:..::.|||.||.|.:..|:              |:      :.|.|||.|||. ..
 Frog    68 NGYNVSPAESFTLSNNGHTVQMSLVPTM--------------QIKIAPFHYTASQLHLHWGQRGT 118

  Fly   117 SKGSEHCLDGNYYDGEVHIVHKNA-SYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICK 180
            .||||||::|..:.||||:|:.|: .|.....|..:.:|.|||.:.:    :.....|....|..
 Frog   119 QKGSEHCIEGKRFAGEVHLVNYNSDKYSDITTAMKESDGLAVLGILL----EVGPFNPTFEKIIS 179

  Fly   181 QVSSITKLDDSCPLEDSMALQDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKE--- 242
            |:.||...|.|..:......:.|...:|  :|:.|:||||||||..:|:|.||..|:.:.:|   
 Frog   180 QLHSIGYKDQSVQIAGFNVQELLPKRLD--EYYRYEGSLTTPPCYPSVLWTVFRNPVTISEEQLI 242

  Fly   243 -LWKHFWQLRDSRDQRVLNTYRELQDGHDRPV 273
             |....:....:...::.|.||:||...||.|
 Frog   243 TLETALYSTDRNESVQMTNNYRQLQPHGDRLV 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH4NP_651298.1 alpha_CA 35..274 CDD:238200 76/252 (30%)
ca12NP_001016431.1 alpha_CA_XII_XIV 30..278 CDD:239400 79/265 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 1 1.000 - - FOG0000047
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X57
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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