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Protein Alignment CAH4 and Ca3

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	250	Identity:	75/250 - (30%)
Similarity:	109/250 - (43%)	Gaps:	56/250 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    14 GTRSHFGFNYDKQGRDWN----VKCGERQSPIALWSCNAITCNVPKLKFLNYHKSL------CDP 68
            |..||.|..:      |:    :..|:.||||.|.:           |.:.:..||      .||
  Rat     6 GYASHNGPEH------WHELYPIAKGDNQSPIELHT-----------KDIRHDPSLQPWSVSYDP 53

  Fly    69 LS---VINNGLTVLMRIPKTVDGSRPSLCISTEGQQV---FEADQLHFHWGSALSKGSEHCLDGN 127
            .|   ::|||.|..:....|.|.|      ...|..:   :...|.|.||||:...||||.:||.
  Rat    54 GSAKTILNNGKTCRVVFDDTFDRS------MLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGV 112

  Fly   128 YYDGEVHIVHKNASYKSNKEAGLQPNGFAVLALFI---RNLEDPNIETPAMNMICK--QVSSITK 187
            .|..|:|:||.|..|.:..||..||:|.||:.:|:   |...:..|...|::.|..  :.:....
  Rat   113 KYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFNH 177

  Fly   188 LDDSCPLEDSMALQDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKE 242
            .|.||          ||.:  .:.|:||.||.|||||.|.::|.:...|:.|..:
  Rat   178 FDPSC----------LFPA--CRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSD 220

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.