DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH4 and Car2

DIOPT Version :9

Sequence 1:NP_651298.1 Gene:CAH4 / 42965 FlyBaseID:FBgn0039235 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_062164.1 Gene:Car2 / 54231 RGDID:2240 Length:260 Species:Rattus norvegicus


Alignment Length:286 Identity:75/286 - (26%)
Similarity:121/286 - (42%) Gaps:58/286 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 HFGFNYDKQGRDWN----VKCGERQSPIALWSCNAITCNVPKLKFLNYHKSLCDPL--------- 69
            |:|::......:|:    :..|:||||:.:.:..|            .|.....||         
  Rat     4 HWGYSKSNGPENWHKEFPIANGDRQSPVDIDTGTA------------QHDPSLQPLLICYDKVAS 56

  Fly    70 -SVINNGLTVLMRIPKTVDGSRPSLCISTEG--QQVFEADQLHFHWGSALSKGSEHCLDGNYYDG 131
             |::|||.:..:....:.|     ..:..||  ...:...|.||||||:..:||||.::...|..
  Rat    57 KSIVNNGHSFNVEFDDSQD-----FAVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKKKYAA 116

  Fly   132 EVHIVHKNASYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLED 196
            |:|:||.|..|....:|...|:|.|||.:|::           :....:.:..||:...|...:.
  Rat   117 ELHLVHWNTKYGDFGKAVQHPDGLAVLGIFLK-----------IGPASQGLQKITEALHSIKTKG 170

  Fly   197 SMALQDLFASID-------SQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL---- 250
            ..|   .||:.|       :..|:||.|||||||..|.|.|.|...|:.|..|...||.:|    
  Rat   171 KRA---AFANFDPCSLLPGNLDYWTYPGSLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNS 232

  Fly   251 RDSRDQRVLNTYRELQDGHDRPVYRS 276
            ....::.:::.:|..|...:|.:..|
  Rat   233 EGEAEELMVDNWRPAQPLKNRKIKAS 258

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH4NP_651298.1 alpha_CA 35..274 CDD:238200 71/261 (27%)
Car2NP_062164.1 alpha_CA 1..259 CDD:294017 75/286 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..39 7/34 (21%)