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Protein Alignment CAH4 and Car1

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	275	Identity:	78/275 - (28%)
Similarity:	119/275 - (43%)	Gaps:	39/275 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 FNYD-KQGRD-WN----VKCGERQSPIALWSCNAITCNVPKLKFLNYHKSLCDPLSVINNGLTV- 78
            :.|| |.|.| |:    :..|..||||.:.:..|            .|.|...|:||..|..|.
  Rat     6 WGYDSKNGPDQWSKLYPIANGNNQSPIDIKTSEA------------KHDSSLKPVSVSYNPATAK 58

  Fly    79 -LMRIPKTV-----DGSRPSLCISTEGQQVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVH 137
             ::.:..:.     |.|..|:.........:...|.|||||::...||||.:||..|.||:|:||
  Rat    59 EIVNVGHSFHVVFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAKYSGELHLVH 123

  Fly   138 KN-ASYKSNKEAGLQPNGFAVLALFIR-NLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMAL 200
            .| |.|.|..||..:.:|.|::.:.:: ...:||::     .:...:||:.......|..:....
  Rat   124 WNSAKYSSAAEAISKADGLAIIGVLMKVGPANPNLQ-----KVLDALSSVKTKGKRAPFTNFDPS 183

  Fly   201 QDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQLRDSRDQR----VLNT 261
            ..|.:|:|   |:||.||||.||..|:|.|.:....:.:..|.......|..|.:..    ||:.
  Rat   184 SLLPSSLD---YWTYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPAVPVLSN 245

  Fly   262 YRELQDGHDRPVYRS 276
            :|..|....|.|..|
  Rat   246 HRPPQPLKGRTVRAS 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.