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Protein Alignment CAH4 and Ca4

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	288	Identity:	84/288 - (29%)
Similarity:	129/288 - (44%)	Gaps:	60/288 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    23 YDKQGRDWNVKCG-----------ERQSPIALWSCNAITCNV---PKL---KFLNYHKSLCDPLS 70
            |:.|.::.|..|.           .:||||     |.:|...   |.|   .|:.|.:.  ....
  Rat    24 YEIQAKEPNSHCSGPEQWTGDCKKNQQSPI-----NIVTSKTKLNPSLTPFTFVGYDQK--KKWE 81

  Fly    71 VINNGLTVLMRIPKTV---DGSRPSLCISTEGQQVFEADQLHFHWGSALSKGSEHCLDGNYYDGE 132
            |.||..:|.|.:.:.:   .|..|:         .::|.|||.||....:|||||.:||.::..|
  Rat    82 VKNNQHSVEMSLGEDIYIFGGDLPT---------QYKAIQLHLHWSEESNKGSEHSIDGKHFAME 137

  Fly   133 VHIVHKNASYKSNKEAGLQPNGFAVLALFIRNLED------PNIETPAMNMICKQVSSITKLDDS 191
            :|:|||..:.....:.....:..||||..:....:      |.:|  |::.:.|..::.| :.:|
  Rat   138 MHVVHKKMTTGDKVQDSDSKDKIAVLAFMVEVGNEVNEGFQPLVE--ALSRLSKPFTNST-VSES 199

  Fly   192 CPLEDSMALQDLFASIDSQK---YFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQLRDS 253
            |       |||:..  :.:|   ||.||||||||.|.|.|||.||..|:.:.|:.:..|.:....
  Rat   200 C-------LQDMLP--EKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYY 255

  Fly   254 RDQRVLN---TYRELQDGHDRPVYRSKA 278
            ..::.||   ..|.||...:|.|:||.|
  Rat   256 DQEQKLNMKDNVRPLQPLGNRQVFRSHA 283

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.