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Protein Alignment CAH4 and Car9

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_647466.2	Gene:	Car9 / 230099	MGIID:	2447188	Length:	437	Species:	Mus musculus

Alignment Length:	270	Identity:	85/270 - (31%)
Similarity:	131/270 - (48%)	Gaps:	23/270 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    14 GTRSHFGFNYDKQGRDWNVKC-GERQSPIALWSCNAITC-NVPKLKFLNYHKSLCDPLSVINNGL 76
            |..||:.:.........:..| |..|||:.:.......| .:..|:.|.|.......||:.|||.
Mouse   115 GGHSHWSYGGTLLWPQVSPACAGRFQSPVDIRLERTAFCRTLQPLELLGYELQPLPELSLSNNGH 179

  Fly    77 TVLMRIPKTVDGSRPSLCISTEGQQVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKNAS 141
            ||.:.:|       |.|.::....|.:.|.|||.|||::...||||.::|:.:..|:|:||.:.:
Mouse   180 TVQLTLP-------PGLKMALGPGQEYRALQLHLHWGTSDHPGSEHTVNGHRFPAEIHVVHLSTA 237

  Fly   142 YKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLE-DSMALQDLFA 205
            :....||..:|.|.||||.|::  |.|. |..|...:...:..|:  ::...:| ..:.:..|..
Mouse   238 FSELHEALGRPGGLAVLAAFLQ--ESPE-ENSAYEQLLSHLEEIS--EEGSKIEIPGLDVSALLP 297

  Fly   206 SIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKE----LWKHFWQLRDSRDQRVLNTYRELQ 266
            | |..:|:.|:||||||||::.|||.||...:.:..:    |....|..||||.|  || :|..|
Mouse   298 S-DLSRYYRYEGSLTTPPCSQGVIWTVFNETVKLSAKQLHTLSVSLWGPRDSRLQ--LN-FRATQ 358

  Fly   267 DGHDRPVYRS 276
            ..:.|.:..|
Mouse   359 PLNGRTIEAS 368

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.