DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH4 and Car5a

DIOPT Version :9

Sequence 1:NP_651298.1 Gene:CAH4 / 42965 FlyBaseID:FBgn0039235 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_031634.2 Gene:Car5a / 12352 MGIID:101946 Length:299 Species:Mus musculus


Alignment Length:260 Identity:81/260 - (31%)
Similarity:120/260 - (46%) Gaps:43/260 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GERQSPIAL-WSCNAITCNVPKLKFLNYHKSLCDPLSVINNGLTVLMRIPKTVDGSRPSLCISTE 98
            |.|||||.: |..:.....:..|: ::|..:.|..|  .|.|....:....:.:.|      ...
Mouse    55 GTRQSPINIQWKDSVYDPQLAPLR-VSYDAASCRYL--WNTGYFFQVEFDDSCEDS------GIS 110

  Fly    99 GQQV---FEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKNAS-YKSNKEAGLQPNGFAVLA 159
            |..:   :...|.|||||:....||||.:||:.|..|:|:||.|:: |::.|:|.:..||.||:.
Mouse   111 GGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLAVIG 175

  Fly   160 LFIR---------NLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMALQDLFASIDSQKYFTY 215
            :|::         .|.|   ..|.:.....|| ::...|.||.|.   |.:|         |:||
Mouse   176 VFLKLGAHHQALQKLVD---VLPEVRHKDTQV-AMGPFDPSCLLP---ACRD---------YWTY 224

  Fly   216 QGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL----RDSRDQRVLNTYRELQDGHDRPVYRS 276
            .|||||||.||:|.|.|..||::|.......|..|    |...:..::|.||.||...||.:..|
Mouse   225 PGSLTTPPLAESVTWIVQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSS 289

  Fly   277  276
            Mouse   290  289

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH4NP_651298.1 alpha_CA 35..274 CDD:238200 80/256 (31%)
Car5aNP_031634.2 alpha_CA_V 55..290 CDD:239392 81/260 (31%)