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Protein Alignment CAH4 and Car2

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_001344263.1	Gene:	Car2 / 12349	MGIID:	88269	Length:	260	Species:	Mus musculus

Alignment Length:	282	Identity:	77/282 - (27%)
Similarity:	128/282 - (45%)	Gaps:	50/282 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    18 HFGFNYDKQGRDWN----VKCGERQSPIALWSCNAITCNVPKLK--FLNYHKSLCDPLSVINNGL 76
            |:|::......:|:    :..|:||||:.:.:..|  .:.|.|:  .::|.|:...  |::|||.
Mouse     4 HWGYSKHNGPENWHKDFPIANGDRQSPVDIDTATA--QHDPALQPLLISYDKAASK--SIVNNGH 64

  Fly    77 TVLMRIPKTVDGSRPSLCISTEG--QQVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKN 139
            :..:....:.|.:     :...|  ...:...|.||||||:..:||||.::...|..|:|:||.|
Mouse    65 SFNVEFDDSQDNA-----VLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHWN 124

  Fly   140 ASYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLD-----------DSCP 193
            ..|....:|..||:|.|||.:|::       ..||...:.|.:.::..:.           |.|.
Mouse   125 TKYGDFGKAVQQPDGLAVLGIFLK-------IGPASQGLQKVLEALHSIKTKGKRAAFANFDPCS 182

  Fly   194 LEDSMALQDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL----RDSR 254
            |        |..::|   |:||.|||||||..|.|.|.|...|:.|..|...||..|    ....
Mouse   183 L--------LPGNLD---YWTYPGSLTTPPLLECVTWIVLREPITVSSEQMSHFRTLNFNEEGDA 236

  Fly   255 DQRVLNTYRELQDGHDRPVYRS 276
            ::.:::.:|..|...:|.:..|
Mouse   237 EEAMVDNWRPAQPLKNRKIKAS 258

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.