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Protein Alignment CAH4 and Car1

DIOPT Version :9

Sequence 1:	NP_651298.1	Gene:	CAH4 / 42965	FlyBaseID:	FBgn0039235	Length:	279	Species:	Drosophila melanogaster
Sequence 2:	NP_001077426.1	Gene:	Car1 / 12346	MGIID:	88268	Length:	261	Species:	Mus musculus

Alignment Length:	274	Identity:	73/274 - (26%)
Similarity:	115/274 - (41%)	Gaps:	35/274 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    19 FGFNYDKQGRDWN----VKCGERQSPIALWSCNAITCNVPKLKFLNYHKSLCDPLSVINNGLTV- 78
            :|:..:.....|:    :..|..||||.:.:..|            .|.|...|||:..|..|.
Mouse     6 WGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEA------------NHDSSLKPLSISYNPATAK 58

  Fly    79 -LMRIPKTV-----DGSRPSLCISTEGQQVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVH 137
             ::.:..:.     |.|..|:.........:...|.|||||::...||||.:||..|.||:|:||
Mouse    59 EIVNVGHSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVH 123

  Fly   138 KN-ASYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMALQ 201
            .| |.|.|..||..:.:|.|:|.:.::    .....|::..:...::|:.......|..:.....
Mouse   124 WNSAKYSSASEAISKADGLAILGVLMK----VGPANPSLQKVLDALNSVKTKGKRAPFTNFDPSS 184

  Fly   202 DLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQLRDSRDQR----VLNTY 262
            .|.:|:|   |:||.||||.||..|:|.|.:....:.:..|.......|..|.:..    ||:.:
Mouse   185 LLPSSLD---YWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGEPAVPVLSNH 246

  Fly   263 RELQDGHDRPVYRS 276
            |..|....|.|..|
Mouse   247 RPPQPLKGRTVRAS 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.