DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH4 and si:ch211-173d10.4

DIOPT Version :9

Sequence 1:NP_651298.1 Gene:CAH4 / 42965 FlyBaseID:FBgn0039235 Length:279 Species:Drosophila melanogaster
Sequence 2:XP_021336146.1 Gene:si:ch211-173d10.4 / 108191769 ZFINID:ZDB-GENE-121214-331 Length:234 Species:Danio rerio


Alignment Length:212 Identity:66/212 - (31%)
Similarity:98/212 - (46%) Gaps:23/212 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 NNGLTVLMRIPKTVDGSRPSLCISTEG---QQVFEADQLHFHWGS---ALSKGSEHCLDGNYYDG 131
            |||.||..::...|        :..:|   :..:...|.|||||.   ....||||.|:.:.:..
Zfish     6 NNGHTVECKLKAGV--------VGVQGGGLKHKYTVLQFHFHWGGRDPRQQPGSEHSLNRHRWPV 62

  Fly   132 EVHIVHKNASYKSNKEAGLQPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLED 196
            |:|||.:.... ::..|...|:||||:..||...|  |:.:.......:.:..|.:..|:..:.|
Zfish    63 EMHIVSRRTDL-NDSAASRVPDGFAVMGFFIDGKE--NVTSQVWENFMEYLQKIPRKGDTVRITD 124

  Fly   197 SMALQDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQLRDSRDQRVLNT 261
            .::||.|...:|..:|:.|.||||||||.|||.|.||..|:.:..:      ||...:.......
Zfish   125 DISLQQLLTGVDLSRYYRYSGSLTTPPCDEAVQWTVFKDPIIISTD------QLLRFQTVSFGYV 183

  Fly   262 YRELQDGHDRPVYRSKA 278
            ||..|..:.|.||.|.|
Zfish   184 YRPQQSLNKRTVYASAA 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH4NP_651298.1 alpha_CA 35..274 CDD:238200 62/206 (30%)
si:ch211-173d10.4XP_021336146.1 alpha_CA 1..196 CDD:320708 62/206 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 1 1.000 - - FOG0000047
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18952
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X57
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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