DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX4 and RABA1f

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_200894.1 Gene:RABA1f / 836207 AraportID:AT5G60860 Length:217 Species:Arabidopsis thaliana


Alignment Length:196 Identity:68/196 - (34%)
Similarity:115/196 - (58%) Gaps:7/196 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTL 73
            :||:::|||.|||:.::.|:...::.....||||::|..:.|::|...:|.||||||||||:|.:
plant    14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAI 78

  Fly    74 TTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGE 138
            |:||||||:|.||:||||...::.|:..||:.::::...::|.:..|||.:.... |.|..|..:
plant    79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNKADLRHL-RAVSTEDAK 142

  Fly   139 KIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRERRGDNFDNDESKDKKSPGSNGLGTFSLG 203
            ..||..:..|.|.|...::|:|:||..:..:|.....|:..:..:|.:...|..      |.::|
plant   143 AFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIGDDPAALPKGQ------TINVG 201

  Fly   204 S 204
            |
plant   202 S 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 61/160 (38%)
RABA1fNP_200894.1 Rab11_like 11..175 CDD:206660 61/161 (38%)

Return to query results.
Submit another query.