DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX4 and AT5G59840

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_200792.1 Gene:AT5G59840 / 836105 AraportID:AT5G59840 Length:216 Species:Arabidopsis thaliana


Alignment Length:170 Identity:89/170 - (52%)
Similarity:131/170 - (77%) Gaps:0/170 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQE 68
            |:....|:|::|||.|||:|::.|:.|..:..::|:|||||||.:.|.|||..||||||||||||
plant    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75

  Fly    69 RFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVD 133
            ||||:|||||||||||||:||||:..|:||:..|:|||:::||.:|.|:|.|||.:...::|.|.
plant    76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP 140

  Fly   134 KERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQ 173
            |.:|:.:|:.:.:.|||.|.|:|:|:|:.|.|:|:.|:::
plant   141 KSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQR 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 87/160 (54%)
AT5G59840NP_200792.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 88/166 (53%)

Return to query results.
Submit another query.