DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and RAB8C

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_195972.1 Gene:RAB8C / 831817 AraportID:AT5G03520 Length:216 Species:Arabidopsis thaliana


Alignment Length:170 Identity:86/170 - (50%)
Similarity:132/170 - (77%) Gaps:0/170 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQE 68
            |:....|:|::|||.|||:|::.|:.|:.:..::|:|||||||.:.:.|||..||||||||||||
plant    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQE 75

  Fly    69 RFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVD 133
            ||||:|||||||||||||:||||:..|:||:..|::||:::||.:|.|:|.|||.:...::|.|.
plant    76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVP 140

  Fly   134 KERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQ 173
            ..:|:.:|:.:.:.|||.|.|:|:|:|:.|:|:|:.|:::
plant   141 TAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQR 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 84/160 (53%)
RAB8CNP_195972.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 85/166 (51%)

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