DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and RAB1C

DIOPT Version :9

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_193486.1 Gene:RAB1C / 827468 AraportID:AT4G17530 Length:202 Species:Arabidopsis thaliana


Alignment Length:163 Identity:83/163 - (50%)
Similarity:121/163 - (74%) Gaps:1/163 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTL 73
            :|:|::|||.|||:|::.|:.|:.|.|:||||||:|||.:.:..||..||||||||||||||||:
plant     9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73

  Fly    74 TTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGE 138
            |::|||||.||::.||||:|||:||:..||..|...||.:|.|:|.||||:.: :|::|..|..:
plant    74 TSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-SQKVVSTETAK 137

  Fly   139 KIAENFDMPFFEVSCKSNINIEDAFLSLARKIR 171
            ..|:...:||.|.|.|:..|:|:||:::...|:
plant   138 AFADELGIPFLETSAKNATNVEEAFMAMTAAIK 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 82/160 (51%)
RAB1CNP_193486.1 Rab1_Ypt1 7..172 CDD:206661 83/163 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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