DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and RAB1A

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_004152.1 Gene:RAB1A / 5861 HGNCID:9758 Length:205 Species:Homo sapiens


Alignment Length:165 Identity:83/165 - (50%)
Similarity:128/165 - (77%) Gaps:1/165 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTL 73
            :|:|::|||.|||:|::.|:.|:.|.::||||||:|||.:.|.|||..||||||||||||||||:
Human    12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 76

  Fly    74 TTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGE 138
            |::|||||.||:::||||:.||:||:..||:.|...||.:|.|:|.||||:.: |:::||....:
Human    77 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAK 140

  Fly   139 KIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQ 173
            :.|::..:||.|.|.|:..|:|.:|:::|.:|:::
Human   141 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 82/160 (51%)
RAB1ANP_004152.1 Rab1_Ypt1 10..175 CDD:206661 83/163 (51%)
Switch 1. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 34..48 7/13 (54%)
Switch 2. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 66..83 13/16 (81%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..205
Blue background indicates that the domain is not in the aligned region.

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