DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and cracr2ab

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:XP_009298523.1 Gene:cracr2ab / 564347 ZFINID:ZDB-GENE-041210-94 Length:773 Species:Danio rerio


Alignment Length:168 Identity:61/168 - (36%)
Similarity:112/168 - (66%) Gaps:1/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTL 73
            :||:::|:|:||||.::.|:||.:::....:|:|||:..:.:||....:.||:||||||||:|::
Zfish   587 FKVILVGNSSVGKTALLRRFCDGQFHSATSATVGIDYSVRTLNLGDSHVALQLWDTAGQERYRSI 651

  Fly    74 TTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGE 138
            |..::|.|.|::::||:|..:|::::..||.:|||.....:..:|.|||.: ...:|.|..:..:
Zfish   652 TKQFFRKADGVVVIYDITMEDSFSSVRPWLSSIQEAVGDPIPVMLLGNKSD-KENEREVQTKEAD 715

  Fly   139 KIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRER 176
            .:||..::.|:|.|..:..|:.:|.:.|||.:|||.:|
Zfish   716 LLAEEANLMFYECSAYTGANVLEAMIHLARVLREQEDR 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 57/160 (36%)
cracr2abXP_009298523.1 FRQ1 <42..108 CDD:444056
Smc <171..>378 CDD:440809
Rab 587..745 CDD:206640 55/158 (35%)
Blue background indicates that the domain is not in the aligned region.

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