DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and rab15

DIOPT Version :9

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001002318.1 Gene:rab15 / 436590 ZFINID:ZDB-GENE-040718-2 Length:212 Species:Danio rerio


Alignment Length:216 Identity:83/216 - (38%)
Similarity:133/216 - (61%) Gaps:9/216 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALDFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTA 65
            ||..:...:::|:||||.|||||::.|:.|.:::.::|||||:|||.|.:.:||:.:::||||||
Zfish     1 MAKQYDVLFRLLLLGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTLEIDGIKVRIQIWDTA 65

  Fly    66 GQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQR 130
            ||||::|:|..|||.|.||.|:||:|:..|:.::..|..::.|.|...|.|:|.|||.: ...:|
Zfish    66 GQERYQTITKQYYRRAQGIFLVYDITSERSFQHIMKWASDVDEYAPEKVQKILVGNKSD-EQEKR 129

  Fly   131 MVDKERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRERRGDNFD---NDESKDKKSP 192
            .|..|:|:|:|:.:.|.|||.|..:|.||.::|..||..:.:..::..|...   |||.......
Zfish   130 QVATEQGDKLAKAYGMDFFETSAFTNHNITESFTRLAELVLQANKKDLDLLGGSLNDELNLADLE 194

  Fly   193 GSNGLGTFSLGSLSGENRCTC 213
            ...|     |.::|.:.|.:|
Zfish   195 EQEG-----LCNVSDDTRKSC 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 72/160 (45%)
rab15NP_001002318.1 Rab15 9..172 CDD:206698 72/163 (44%)
RAB 9..171 CDD:197555 72/162 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.870

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