DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and rab5b

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_998050.1 Gene:rab5b / 405821 ZFINID:ZDB-GENE-040426-2593 Length:214 Species:Danio rerio


Alignment Length:194 Identity:64/194 - (32%)
Similarity:114/194 - (58%) Gaps:9/194 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERF 70
            :..:|:::|||..|||:.:|.|:...::.:...:|||..|..:.:.||...:|.:|||||||||:
Zfish    18 ICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQSVCLDDTTVKFEIWDTAGQERY 82

  Fly    71 RTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKE 135
            .:|...|||||...::::|:|..|::.....|::.:|..|||::|..|||||.:. |.:|:|:.|
Zfish    83 HSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQRQASPNIVIALAGNKADL-ADKRLVEYE 146

  Fly   136 RGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKI--------REQRERRGDNFDNDESKDKKS 191
            ..:..||:..:.|.|.|.|:.:|:.:.||::|:|:        ......||.|..:.:::..:|
Zfish   147 EAQTYAEDTGLLFMETSAKTAMNVNELFLAIAKKMPKTDTQNPTHAARHRGVNLQDPDAQSTRS 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 59/160 (37%)
rab5bNP_998050.1 Rab5_related 20..182 CDD:206653 60/162 (37%)

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