DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and Cracr2a

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:XP_006506404.1 Gene:Cracr2a / 381812 MGIID:2685919 Length:751 Species:Mus musculus


Alignment Length:184 Identity:63/184 - (34%)
Similarity:112/184 - (60%) Gaps:2/184 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTL 73
            :|::.:|||.||||..:.|.|:.::.....:|:|||::.|.:.:|...:.||:||||||||:|.:
Mouse   566 FKIVFVGDSAVGKTSFLRRLCEARFSPGMAATVGIDYRVKTVTVDNAQVALQLWDTAGQERYRCI 630

  Fly    74 TTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGE 138
            :..::|.|.|:.:|||:|..:|:.::..||.:::|.....:..:|.|||.: :..:|.|.:..||
Mouse   631 SQQFFRKADGVAVMYDLTAKQSFLSIRQWLSSVEEAVGDRIPVLLLGNKLD-NEKEREVPRGLGE 694

  Fly   139 KIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRER-RGDNFDNDESKDKKS 191
            ::|:..::.|:|.|..|..|.:::.|.|||.::||.:. |.|.........|||
Mouse   695 QLAKENNLIFYECSACSGHNAQESLLHLARLLKEQEDTVRNDTIQVGPPAKKKS 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 56/160 (35%)
Cracr2aXP_006506404.1 FRQ1 <73..137 CDD:444056
FRQ1 110..>187 CDD:444056
Smc <183..>427 CDD:440809
Rab 566..724 CDD:206640 54/158 (34%)
Blue background indicates that the domain is not in the aligned region.

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