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Protein Alignment RabX4 and Rab40c
DIOPT Version :9
Sequence 1: | NP_733043.1 |
Gene: | RabX4 / 42960 |
FlyBaseID: | FBgn0051118 |
Length: | 213 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_872616.1 |
Gene: | Rab40c / 359728 |
RGDID: | 727914 |
Length: | 281 |
Species: | Rattus norvegicus |
Alignment Length: | 159 |
Identity: | 68/159 - (42%) |
Similarity: | 97/159 - (61%) |
Gaps: | 2/159 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 KVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRTLT 74
|.|::|||:|||..|:....|......|..:.|||:|...|.|||..:||::|||:||.||.|:.
Rat 16 KFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIF 80
Fly 75 TAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKERGEK 139
.:|.|||.||||:||:||..|::.:..|::.|.|:| |.|.::|.||:... |.:|.|..|:...
Rat 81 RSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLHL-AFKRQVPTEQARA 143
Fly 140 IAENFDMPFFEVSCKSNINIEDAFLSLAR 168
.||...|.|||||...|.|:.::|..|:|
Rat 144 YAEKNCMTFFEVSPLCNFNVIESFTELSR 172
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
RabX4 | NP_733043.1 |
RAB |
9..170 |
CDD:197555 |
68/159 (43%) |
Rab40c | NP_872616.1 |
Rab40 |
9..281 |
CDD:133321 |
68/159 (43%) |
SOCS_Rab40 |
187..229 |
CDD:239711 |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG0078 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
3 | 2.810 |
|
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