DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and Rab5c

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001099310.2 Gene:Rab5c / 287709 RGDID:1307095 Length:216 Species:Rattus norvegicus


Alignment Length:190 Identity:63/190 - (33%)
Similarity:115/190 - (60%) Gaps:11/190 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERF 70
            :..:|:::||:|.|||:.:|.|:...::::...||||..|..:.:.||...:|.:|||||||||:
  Rat    19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 83

  Fly    71 RTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVDKE 135
            .:|...|||||...:::||:||.:::.....|::.:|..|||::|..|||||.:. |::|.|:.:
  Rat    84 HSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 147

  Fly   136 RGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRERRGDNFDNDESKDKKSPGSN 195
            ..:..|::..:.|.|.|.|:.:|:.:.|:::|:|:.:          |:......:||.|
  Rat   148 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK----------NEPQNAAGAPGRN 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 58/160 (36%)
Rab5cNP_001099310.2 Rab5_related 21..183 CDD:206653 59/162 (36%)

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