DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX4 and Rab8b

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_775589.1 Gene:Rab8b / 235442 MGIID:2442982 Length:207 Species:Mus musculus


Alignment Length:196 Identity:101/196 - (51%)
Similarity:142/196 - (72%) Gaps:9/196 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALDFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTA 65
            ||..:...:|:|::|||.|||||::.|:.::.:..|:|||||||||.:.|.|||..|||||||||
Mouse     1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTA 65

  Fly    66 GQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQR 130
            |||||||:|||||||||||:|:||:||.:|::|:..|:|||:|:||.||.:::.||||:.: .:|
Mouse    66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN-DKR 129

  Fly   131 MVDKERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRERRGDNFDNDESKDKKSPGSN 195
            .|.||||||:|.::.:.|.|.|.||:.|:|:||.:|||.|..:..|:        ..|..|.|:.
Mouse   130 QVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRK--------MNDSNSSGAG 186

  Fly   196 G 196
            |
Mouse   187 G 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 93/160 (58%)
Rab8bNP_775589.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 94/166 (57%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 7/13 (54%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 15/16 (94%)

Return to query results.
Submit another query.