DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and rsef-1

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001359915.1 Gene:rsef-1 / 180593 WormBaseID:WBGene00016344 Length:634 Species:Caenorhabditis elegans


Alignment Length:164 Identity:60/164 - (36%)
Similarity:98/164 - (59%) Gaps:1/164 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQERFRT 72
            |:::::.||:.|||:..|.|....::.:...||:|:||..|.:|:||..:.||:||||||||||:
 Worm   439 TFRIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQERFRS 503

  Fly    73 LTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECS-ATQRMVDKER 136
            |..:|:|.|.|.:|:|||...:|:..:..|:..|:|:....:..:|.|||.:.. :|...|.|..
 Worm   504 LCKSYFRRADGAILVYDVCAEQSFLRVRDWIETIKESTERSIPIILVGNKVDMRISTPGSVAKTD 568

  Fly   137 GEKIAENFDMPFFEVSCKSNINIEDAFLSLARKI 170
            |..:|....:.|.|.|.....||::|.|:|.|::
 Worm   569 GASMAAAMGVLFMETSALDGSNIDNAMLALTREL 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 59/161 (37%)
rsef-1NP_001359915.1 EF-hand_7 3..63 CDD:463900
SMC_N <155..>362 CDD:481474
Rab 440..600 CDD:206640 58/159 (36%)
Blue background indicates that the domain is not in the aligned region.

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