DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX4 and rab3c

DIOPT Version :10

Sequence 1:NP_733043.1 Gene:RabX4 / 42960 FlyBaseID:FBgn0051118 Length:213 Species:Drosophila melanogaster
Sequence 2:XP_002938225.2 Gene:rab3c / 100496123 XenbaseID:XB-GENE-494770 Length:227 Species:Xenopus tropicalis


Alignment Length:205 Identity:84/205 - (40%)
Similarity:122/205 - (59%) Gaps:14/205 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQE 68
            :|...:|:|::|:|:||||..:.||.|:.:...::||:|||||.|.:..:...||||||||||||
 Frog    26 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 90

  Fly    69 RFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPDVVKVLAGNKCECSATQRMVD 133
            |:||:||||||||||.:||||:||.||:|.:..|...|:..:..:...:|.||||:.. .:|::.
 Frog    91 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME-DERVIS 154

  Fly   134 KERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQRERRGDNFDNDES----------KD 188
            .|||:.:||.....|||.|.|.|||::..|..|...|   .::..:|.:.|.:          .|
 Frog   155 AERGKHLAEQLGFEFFEASAKDNINVKQTFERLVDII---CDKMSENIETDAAATAAKQTTRLTD 216

  Fly   189 KKSPGSNGLG 198
            |..|.....|
 Frog   217 KAPPQQPNCG 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX4NP_733043.1 RAB 9..170 CDD:197555 76/160 (48%)
rab3cXP_002938225.2 Rab3 30..194 CDD:206657 77/167 (46%)

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