DRSC/TRiP Functional Genomics Resources

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Protein Alignment niki and RCC1L

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_110425.2 Gene:RCC1L / 81554 HGNCID:14948 Length:464 Species:Homo sapiens


Alignment Length:275 Identity:73/275 - (26%)
Similarity:109/275 - (39%) Gaps:37/275 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   445 PIQLPPKAVIVDVAMSDSHFVVVNEDGSAYAWGEGTHGQLGLTALE----AWKHYPSRMESVRNY 505
            |:..|.:..::.|:...:|.:|:.:....::.|..::||.|...:|    :..|...||:.....
Human   167 PLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQ 231

  Fly   506 HVVSACAGDGFTILVTQAGSLLSCGSNAHLALGQDEQRNYH---SP-KLIARLADVRVEQVAAGL 566
            .|..|| |...::.:|..|.:.|||..|.   ||....:|:   || ||...||.|.|.|||...
Human   232 VVQVAC-GQDHSLFLTDKGEVYSCGWGAD---GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYG 292

  Fly   567 QHVLALSREGAVYVWGTSTCGALGLGNYQQQQKFPQKILLSHVKTKPSKIYCGPDTSAVLFANGE 631
            ...||:|.:|.::.||.|....|.......|...|:.:..|.| .|..:..||....|||...|.
Human   293 DCCLAVSADGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGV-GKVRQAACGGTGCAVLNGEGH 356

  Fly   632 LHVCGSNDYNKLGFQRSAKITAFKKVQLPHKVTQACFSST----------------HSVFLVEGG 680
            :.|.|   |..||     |.....:..:|..:....|..|                |...|...|
Human   357 VFVWG---YGILG-----KGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKG 413

  Fly   681 YVYTMGRNAEGQRGI 695
            .::..|:|..|..||
Human   414 ELFVWGKNIRGCLGI 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855
S_TKc 105..354 CDD:214567
ATS1 445..747 CDD:227511 73/275 (27%)
RCC1LNP_110425.2 RCC1 1. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 58..124
RCC1 2. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 128..191 5/23 (22%)
RCC1 130..189 CDD:278826 4/21 (19%)
RCC1_2 176..205 CDD:290274 4/28 (14%)
RCC1 3. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 193..247 12/54 (22%)
RCC1 195..245 CDD:278826 12/50 (24%)
RCC1_2 232..261 CDD:290274 10/32 (31%)
RCC1 4. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 248..300 21/54 (39%)
RCC1 248..298 CDD:278826 20/52 (38%)
RCC1 301..351 CDD:278826 13/50 (26%)
RCC1 5. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 302..353 15/51 (29%)
RCC1 6. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 354..411 12/64 (19%)
RCC1_2 396..425 CDD:290274 5/28 (18%)
RCC1 7. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 412..461 6/17 (35%)
RCC1 412..455 CDD:278826 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.010

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