DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment niki and RCC2

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_001129676.1 Gene:RCC2 / 55920 HGNCID:30297 Length:522 Species:Homo sapiens


Alignment Length:434 Identity:105/434 - (24%)
Similarity:158/434 - (36%) Gaps:115/434 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 GEGTHGQLGLTALEAW-----KHYPSRMESVRNY-------H------------VVS-ACAGDGF 516
            |....|||.:.....|     |..|.:..:.||.       |            ||| :||  ..
Human    99 GSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGSCA--AH 161

  Fly   517 TILVTQAGSLLSCGSNAHLALGQDEQRNYHSPKLIARLADVRVEQVAAGLQHVLALSREGAVYVW 581
            ::|:|..|.|.|.|.|....||..:.:...:|:||..|:...:...|.|..|.|||:..|:|:.:
Human   162 SLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTETGSVFAF 226

  Fly   582 GTSTCGALGLGNYQQQQKFPQKILLSHVKTKP-SKIYCGPDTSAVLFANGELHVCGSNDYNKLGF 645
            |.:..|.|||||.......|.:|:.:   .:| :|:.||.:.|.::...|.|:..|..:|.:||.
Human   227 GENKMGQLGLGNQTDAVPSPAQIMYN---GQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGH 288

  Fly   646 QRSAKITA-------------------FKKVQ------LPHKVTQ--ACFSSTHSVFLVEGGYVY 683
            ....|..|                   .:|.:      :|:.|.:  || .:.|::.|.....|:
Human   289 NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVAC-GANHTLVLDSQKRVF 352

  Fly   684 TMGRNAEGQRGIRHCNSVDH--PTLVD--SVKSRYIVKANCSDQCTIVASEDNIITVWGTRN--- 741
            :.|....|:.|  |....|.  |.||.  ....|...:......|:...||...:..||..|   
Human   353 SWGFGGYGRLG--HAEQKDEMVPRLVKLFDFPGRGASQIYAGYTCSFAVSEVGGLFFWGATNTSR 415

  Fly   742 ----------GLPG--IGSTNCGLGLQIC-----------TPNM-ELELGNNTAAFTNFLASVYK 782
                      .|.|  |.|..||....|.           :|.. ||..|::..          |
Human   416 ESTMYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWGPSPTFGELGYGDHKP----------K 470

  Fly   783 SELILEPVDIL-ALFSSKEQCDRGYYVQVHDVYPLAHSVLVLVD 825
            |....:.|..| .:||  ||...||          :||:::..|
Human   471 SSTAAQEVKTLDGIFS--EQVAMGY----------SHSLVIARD 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855
S_TKc 105..354 CDD:214567
ATS1 445..747 CDD:227511 83/341 (24%)
RCC2NP_001129676.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83
RCC1 1 103..165 14/63 (22%)
ATS1 <151..481 CDD:227511 85/347 (24%)
RCC1 2 168..219 17/50 (34%)
RCC1 3 221..271 16/52 (31%)
RCC1 4 273..347 15/74 (20%)
Required for interaction with RAC1. /evidence=ECO:0000269|PubMed:28869598 318..325 1/6 (17%)
RCC1 5 348..401 11/54 (20%)
RCC1 6 403..447 10/43 (23%)
RCC1 7 448..501 16/74 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 502..522 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.010

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