DRSC/TRiP Functional Genomics Resources

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Protein Alignment niki and Sergef

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_038956885.1 Gene:Sergef / 365243 RGDID:1563497 Length:481 Species:Rattus norvegicus


Alignment Length:387 Identity:109/387 - (28%)
Similarity:143/387 - (36%) Gaps:122/387 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   454 IVDVAMSDSHFVVVNEDGSAYAWGEGTHGQLGLTALEAWKHYPSRMESVRNYHVVS--------- 509
            |..|.....|.|||.:.|..:..|....|||||          ...|.|..:.:..         
  Rat    51 IKSVTGGGGHSVVVTDGGGLFVCGLNKDGQLGL----------GHTEEVLRFTICKPLLGCPIRQ 105

  Fly   510 -ACAGDGFTILVTQAGSLLSCGSNAHLALGQDE-QRNYHSPKLIARLADVRVEQVAAGLQHVLAL 572
             ||..| |||::|:.|.:|||||||...||... .|....|:.|..|.: :|..|||||:|.||.
  Rat   106 VACGWD-FTIMLTEKGQVLSCGSNAFGQLGVPHGPRKCVVPQAIECLRE-KVVCVAAGLRHALAT 168

  Fly   573 SREGAVYVWGTSTCGALGLGNYQQQQKFPQKILLSHVKTKPSKI-----------YCGPDTSAVL 626
            :..|:.:.|||      ||.:..::....|.:.|.....:||::           ..|.|.||.|
  Rat   169 TDTGSTFQWGT------GLASSGRRLCPGQNLPLFLTAKEPSRVTGLESSTVVCAVAGSDHSASL 227

  Fly   627 FANGELHVCGSNDYNKLGFQRSAKITAFKKVQLP----------HKVTQACFSSTHSV------- 674
            ...|||:|.|.|.:.:|     |.:..|  :.||          .|||......||.|       
  Rat   228 TDTGELYVWGRNKHGQL-----ASLATF--LPLPQRVEAHYFQDEKVTAVWSGWTHLVAKTGNFR 285

  Fly   675 ---------FLV-----------EGGYVYTMGRNAEGQRG--------IRH---CNSVDHPTLVD 708
                     |.|           |.|.|:|.||...||.|        .:|   .:|:....|.:
  Rat   286 APWTGMLCFFSVNRGPRGALTTSETGKVFTWGRADYGQLGRTLGSPEAQKHGEQDSSLAFQRLQN 350

  Fly   709 SVKSRYIVKANCSDQCTIVASEDNIITVWGTRNGLPGIG----------STNCGLGLQICTP 760
            ||.|..        .|...|:|       || :..||.|          |...||.|| |.|
  Rat   351 SVPSPL--------HCLTGAAE-------GT-SAAPGAGMNMACVGTAPSPMSGLQLQ-CRP 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855
S_TKc 105..354 CDD:214567
ATS1 445..747 CDD:227511 101/362 (28%)
SergefXP_038956885.1 ATS1 17..>325 CDD:227511 87/298 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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