DRSC/TRiP Functional Genomics Resources

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Protein Alignment niki and Rcc1l

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_001101802.1 Gene:Rcc1l / 360796 RGDID:1307558 Length:461 Species:Rattus norvegicus


Alignment Length:270 Identity:75/270 - (27%)
Similarity:112/270 - (41%) Gaps:27/270 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   445 PIQLPPKAVIVDVAMSDSHFVVVNEDGSAYAWGEGTHGQLGLTALE----AWKHYPSRMESVRNY 505
            |:..|.:..::.|:...:|.:|:.:....::.|...|||.|...:|    :..|...||:.... 
  Rat   164 PLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNAHGQCGRKVVEDEVYSESHKVHRMQDFEG- 227

  Fly   506 HVVSACAGDGFTILVTQAGSLLSCGSNAHLALGQDEQRNYH---SP-KLIARLADVRVEQVAAGL 566
            .||....|...::.:|..|.:.|||..|.   ||....:|:   :| ||...||.|.|.|||...
  Rat   228 QVVQVVCGQDHSLFLTDKGEVYSCGWGAD---GQTGLGHYNITSTPSKLGGDLAGVTVVQVATYG 289

  Fly   567 QHVLALSREGAVYVWGTSTCGALGLGNYQQQQKFPQKILLSHVKTKPSKIYCGPDTSAVLFANGE 631
            ...||||.:|.|:.||.|....|.......|...|:.:..|.| .|..::.||....|:|...|.
  Rat   290 DCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGV-GKVKQVACGGTGCAILNEEGH 353

  Fly   632 LHVCGSNDYNKLGFQRSAKITAFKKVQLPH-----------KVTQACFSSTHSVFLVEGGYVYTM 685
            :.|.|   |..||...:...||..::..|.           ||:|.....:|...|...|.::..
  Rat   354 VFVWG---YGILGKGPNLSETALPEMIPPTLFGLTEFNPEVKVSQIRCGLSHFAALTNKGELFVW 415

  Fly   686 GRNAEGQRGI 695
            |:|..|..||
  Rat   416 GKNIRGCLGI 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855
S_TKc 105..354 CDD:214567
ATS1 445..747 CDD:227511 75/270 (28%)
Rcc1lNP_001101802.1 RCC1 127..186 CDD:278826 4/21 (19%)
RCC1_2 173..202 CDD:290274 5/28 (18%)
RCC1 192..242 CDD:278826 12/50 (24%)
RCC1_2 229..258 CDD:290274 9/31 (29%)
RCC1 245..295 CDD:278826 19/52 (37%)
RCC1 298..348 CDD:278826 14/50 (28%)
RCC1_2 393..422 CDD:290274 7/28 (25%)
RCC1 409..452 CDD:278826 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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