DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment niki and herc1

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_009301513.1 Gene:herc1 / 336598 ZFINID:ZDB-GENE-030131-8542 Length:4867 Species:Danio rerio


Alignment Length:358 Identity:100/358 - (27%)
Similarity:161/358 - (44%) Gaps:27/358 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   460 SDSHFVVVNEDGSAYAWGEGTHGQLGLTALEAWKHYPSRMESVRNYHVVSACAGDGFTILVTQAG 524
            ||.|.:.:.|.|..::||:|.:|:||....:..:. |.::|:::...||....|...:.:||..|
Zfish  4096 SDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRR-PRQIEALQGEEVVQMSCGFKHSAVVTSDG 4159

  Fly   525 SLLSCGSNAHLALGQDEQRNYHSPKLIARLADVRVEQVAAGLQHVLALSREG-AVYVWGTSTCGA 588
            .|.|.|:..:..||.....|...|:.::.|...:|.|||.||.|.||:|.:| .|:.:|....|.
Zfish  4160 KLFSFGNGDYGRLGLGNTSNKKLPERVSALEGHQVGQVACGLNHTLAVSADGMTVWAFGDGDYGK 4224

  Fly   589 LGLGNYQQQQKFPQKI-LLSHVKTKPSKIYCGPDTSAVLFANGELHVCGSNDYNKLGFQRSAKIT 652
            ||||| ...:..|||: :|..:..|  |:.||...|..|..:|.::..|.:  ..:|........
Zfish  4225 LGLGN-STAKSSPQKVDVLCGIGIK--KVACGTQFSVALTKDGNVYTFGQD--RLIGLPEGRARN 4284

  Fly   653 AFKKVQLPHK----VTQACFSSTHSVFLVEGGYVYTMGRNAEGQRGIRHCNSVDHPTLVDSVKSR 713
            ..:..|:|..    :......:.|::.|...|.||..|.|:|||.|:.|.|.|..|||:.:::.:
Zfish  4285 HNRPQQVPALTGVFIEDVAVGAEHTLTLSSTGDVYAWGSNSEGQLGLGHTNHVREPTLISALQGK 4349

  Fly   714 YIVKANCSDQCTIVASEDNIITVW---GTRNGLPGIGSTNCGLGLQICTPNMELELGN-NTAAFT 774
            .|.:.: :.:|...|        |   ......|| .|....|||.:|.|.....|.. :..|..
Zfish  4350 NIQQIS-AGRCHSAA--------WTAPPVPPRAPG-SSVPLQLGLPVCVPPQYSALREVSMEALR 4404

  Fly   775 NFLASVYK-SELILEPVDILALFSSKEQCDRGY 806
            ..|..:|. |:|:.....:|.|..:.:.|...|
Zfish  4405 ARLRLLYHFSDLMYSSWRLLNLSPNNQSCTSRY 4437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855
S_TKc 105..354 CDD:214567
ATS1 445..747 CDD:227511 84/295 (28%)
herc1XP_009301513.1 RCC1 369..726 CDD:332518
SPRY_HERC1 2004..2161 CDD:293939
UBA_HERC1 2729..2772 CDD:270584
WD40 3406..3773 CDD:330360
WD40 repeat 3419..3452 CDD:293791
WD40 repeat 3479..3514 CDD:293791
WD40 repeat 3527..3569 CDD:293791
WD40 repeat 3575..3611 CDD:293791
WD40 repeat 3618..3660 CDD:293791
WD40 repeat 3665..3710 CDD:293791
WD40 3737..>3831 CDD:330360
WD40 repeat 3749..3784 CDD:293791
RCC1 4004..4351 CDD:332518 78/260 (30%)
HECTc 4479..4847 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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