DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment niki and Nek3

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_006253421.1 Gene:Nek3 / 306576 RGDID:1307419 Length:471 Species:Rattus norvegicus


Alignment Length:444 Identity:137/444 - (30%)
Similarity:216/444 - (48%) Gaps:71/444 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 NYEKVRVVGQGSFGIAILYRRKSDGHQIVFKQINLSELSPPGRDLAMNEVDVFSKLHHPNIVSYL 168
            ||..:||:|.||||..:|...||.......|:|.|.:.....:: ...|..:.:|:.|||||::.
  Rat     3 NYTVLRVIGHGSFGSVLLATEKSSNQTFAMKEIRLLKSFSDVQN-CRKEAVLLAKMKHPNIVAFK 66

  Fly   169 GSFIKDNTLLIEMEYADGGTLAQIIAERQGKLHFPERYIIAVFEQISSAINYMHSENILHRDLKT 233
            .||..:..|.|.|||.|||.|.|.|.:::||| |||..::..|.||...:|::|...:||||:|:
  Rat    67 ESFEAEGHLYIVMEYCDGGDLTQRIKQQKGKL-FPEDTVLNWFIQICLGVNHIHKRRVLHRDIKS 130

  Fly   234 ANVFLNRRGIVKIGDFGISKIMNTKI-HAQTVLGTPYYFSPEMCEGKEYDNKSDIWALGCILGEM 297
            .||||...|.||:||||.::::::.: .|:|.:|||||..||:.|...|:||||||:|||||.|:
  Rat   131 KNVFLTHDGKVKLGDFGSARLLSSPMAFARTYVGTPYYVPPEIWENLPYNNKSDIWSLGCILYEL 195

  Fly   298 CCLKKTFAASNLSELVTKIMAGNYTPVPSGYTSGLRSLMSNLLQVEAPRRPTASEVLV--YWIPL 360
            |.||..|.|::...|:.||..|...|:|:.|:|.|:.|:..:|:.....||:|:.:|.  ...||
  Rat   196 CALKHPFQANSWKNLILKICQGPIHPLPALYSSKLQCLVKQMLKRNPVHRPSATTLLCRGSLAPL 260

  Fly   361 IFRSLGKNKGYSYEDDVGGPGSDQLTAPVPAAAYSNV-SMELELPTAQTETKQLMIADTAAPHE- 423
            :.:.|.......|        .:|:...|..:...|| ..|...|......     |..|:||. 
  Rat   261 VLKCLPPQIIREY--------GEQILDEVKISKPQNVKKQESGNPPEPPRN-----ASPASPHRQ 312

  Fly   424 ------------ILEKRSVLYQL------KAFGTCFSMAP-------IQLPPKAVI-----VDVA 458
                        .|||.|:|...      :|.|:....:.       ::.||:|::     .|::
  Rat   313 RWERYGPSSAVAALEKASILTSSFTAEDDRAGGSVIKYSEENARRQWVREPPEALLSMLKGADLS 377

  Fly   459 MSDSHFVV------------VNEDGSAYAWGEGTHGQLGLTALEAWKHYPSRME 500
            ::...:.:            ::||.::    :...|.|....::     |.|.|
  Rat   378 LAFQTYTIHRPGTEGFLKGPLSEDTAS----DSVDGDLDSVLVD-----PERFE 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855 105/257 (41%)
S_TKc 105..354 CDD:214567 103/249 (41%)
ATS1 445..747 CDD:227511 11/80 (14%)
Nek3XP_006253421.1 PKc_like 3..257 CDD:304357 105/255 (41%)
S_TKc 4..252 CDD:214567 103/249 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D132059at33208
OrthoFinder 1 1.000 - - FOG0000168
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.