DRSC/TRiP Functional Genomics Resources

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Protein Alignment niki and herc2

DIOPT Version :9

Sequence 1:NP_651293.1 Gene:niki / 42959 FlyBaseID:FBgn0045980 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_012813154.2 Gene:herc2 / 100487407 XenbaseID:XB-GENE-1012659 Length:4848 Species:Xenopus tropicalis


Alignment Length:524 Identity:123/524 - (23%)
Similarity:193/524 - (36%) Gaps:130/524 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 ALGCILGEM----CC--------LKKTFAASNLSELVTKIMAGNYTPVPSGY----TSGLRSLMS 337
            ||.|.| |:    ||        .::...||.::..:.|     .||:|..:    ...:|.||:
 Frog  3866 ALACDL-ELDTLPCCAETHKWAWFRRYCMASRVAVALDK-----RTPLPRQFLDEVAKKIRELMA 3924

  Fly   338 NLLQVEAPR------RPTASEVLVYWIPLIFRSLGKNK------------------GYSYEDDVG 378
            :...:.|..      :....|.||.|:         |:                  |:::...:|
 Frog  3925 DNENMNAGHESHDTFKREQDEQLVQWM---------NRRPDDWTLSAGGSGTIYGWGHNHRGQLG 3980

  Fly   379 GPGSDQLTAPVPAAAYSNVSMELELPTAQTETKQLMIADTAAPHEILEKRSVLYQLKAFGTCFSM 443
            |....::..|.|..|.:                      |..|.:::.....|:.:.|.|..::.
 Frog  3981 GIEGAKVKVPTPCEALA----------------------TLRPVQLIGGEQTLFAVTADGKLYAT 4023

  Fly   444 A-------------PIQLP------PKAVIVDVAMSD--SHFVVVNEDGSAYAWGEGTHGQLGLT 487
            .             .:..|      ....|..||::.  .|.:.::.:|..|:|||...|:||  
 Frog  4024 GYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG-- 4086

  Fly   488 ALEAWKH-------YPSRMESVRNYHVVSACAGDGFTILVTQAGSLLSCGSNAHLALGQDEQRNY 545
                  |       .|..:||:|...||...||...:..:|.||.|.:.|...:..||..:..:.
 Frog  4087 ------HGNRSPCDRPRVIESLRGTEVVDIAAGGAHSACITAAGELYTWGKGRYGRLGHGDSEDQ 4145

  Fly   546 HSPKLIARLADVRVEQVAAGL--QHVLALSREGAVYVWGTSTCGALGLGNYQQQQKFPQKI-LLS 607
            ..|||:..|...||..:|.|.  ...|.|:.:..|:.||....|.||.|. ....|.|.|| .|:
 Frog  4146 LKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG-SDGCKVPMKIDSLT 4209

  Fly   608 HVKTKPSKIYCGPDTSAVLFANGELHVCGSNDYNKLGFQRSAKITAFKKVQ--LPHKVTQACFSS 670
            .|..  :|:.||...|..|..:|.::..|..||::||......:...::||  ...||......|
 Frog  4210 GVGV--TKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 4272

  Fly   671 THSVFLVEGGYVYTMGRNAEGQRGIRHCNSVDHPTLVDSVKSRYIVKANCSDQCTIVASEDNIIT 735
            .|.|...|.|.|||.|.|.|||.|....|::..|.||.:::.:.|.:..|....|:         
 Frog  4273 LHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTL--------- 4328

  Fly   736 VWGT 739
            .|.|
 Frog  4329 AWST 4332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nikiNP_651293.1 STKc_Nek 104..359 CDD:270855 21/91 (23%)
S_TKc 105..354 CDD:214567 18/86 (21%)
ATS1 445..747 CDD:227511 90/315 (29%)
herc2XP_012813154.2 ATS1 <501..794 CDD:227511
Cyt-b5 1219..1291 CDD:395121
MIB_HERC2 1879..1939 CDD:399589
UBA_HERC2 2471..2518 CDD:270585
Cul7 2566..2643 CDD:402903
SH3_15 2651..2708 CDD:408152
ZZ_HERC2 2718..2762 CDD:239084
APC10-HERC2 2777..2922 CDD:176485
ATS1 2968..3334 CDD:227511
ATS1 4037..4342 CDD:227511 90/316 (28%)
HECTc 4435..4806 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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