DRSC/TRiP Functional Genomics Resources

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Protein Alignment Saf-B and RNA15

DIOPT Version :10

Sequence 1:NP_733041.2 Gene:Saf-B / 42958 FlyBaseID:FBgn0039229 Length:928 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:146 Identity:24/146 - (16%)
Similarity:64/146 - (43%) Gaps:13/146 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 TGANSNNKQATLSRNLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSSS 363
            :|.|:..:....||.:::..:........:..:.|..|.||..|::.:.:|..::.|.::.....
Yeast     5 SGVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDL 69

  Fly   364 ADASRCIENLHRTELHGRIISVERTKN-EIGGSLNSKEGKGKAPGDAGNKKKEDDSGKKSGSGKG 427
            ..::..:.||:..:|..|.:....:.| :|.|....::           ::..:.:|..:.:|..
Yeast    70 ESSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQ-----------QQYNNINGNNNNNGNN 123

  Fly   428 SSSNSGDD-KKGGDGN 442
            :::::|.| :..|:.|
Yeast   124 NNNSNGPDFQNSGNAN 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Saf-BNP_733041.2 SAP 11..42 CDD:460424
2A1904 <16..>270 CDD:273344
RRM_SF 311..386 CDD:473069 13/74 (18%)
SWIRM-assoc_1 <588..618 CDD:465142
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 12/75 (16%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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