DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Saf-B and TRA2B

DIOPT Version :9

Sequence 1:NP_733041.2 Gene:Saf-B / 42958 FlyBaseID:FBgn0039229 Length:928 Species:Drosophila melanogaster
Sequence 2:NP_004584.1 Gene:TRA2B / 6434 HGNCID:10781 Length:288 Species:Homo sapiens


Alignment Length:320 Identity:70/320 - (21%)
Similarity:116/320 - (36%) Gaps:73/320 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 EKSNSKDADKKNDDGARSKKRDEKSGDKKDSSEQKSSGKS-SNQKDDKEKSTAAPGGATSSTASS 283
            |..::..:...:..|..::....:|..|:||...:|..:| |..:....:|:......:.|.:.|
Human    13 ESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRS 77

  Fly   284 AAGSKSGSGSSAGNGTGANSNNKQATLSRN------------LWVSGLSTLTRASDLKAIFSKFG 336
            ...|:|.|.|.......::|::..:|..|:            |.|.|||..|...||:.:|||:|
Human    78 HRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYG 142

  Fly   337 KVIGAKVVTNTRTPGTRCYGYVTMSSSADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEG 401
            .:....:|.:.::..:|.:.:|...:..||....|..:..||.||.|.|:.:        .:|..
Human   143 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS--------ITKRP 199

  Fly   402 KGKAPG------DAGNKKKED--DSGKKSGSGKGSSSNSGDDK-------KGGDGNGDSKSVGGD 451
            ....||      ..|:.::.|  |.|...|.         ||:       :||.|.|        
Human   200 HTPTPGIYMGRPTYGSSRRRDYYDRGYDRGY---------DDRDYYSRSYRGGGGGG-------- 247

  Fly   452 LKRDGKESNRARSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQ 511
                               |...|:|||.:..|.||...... |.|...|...|....|:
Human   248 -------------------GGWRAAQDRDQIYRRRSPSPYYS-RGGYRSRSRSRSYSPRR 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Saf-BNP_733041.2 SAP 11..42 CDD:280251
RRM 205..>394 CDD:223796 43/186 (23%)
RRM_SAFB_like 313..386 CDD:240863 23/84 (27%)
SWIRM-assoc_1 <588..618 CDD:293104
TRA2BNP_004584.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 19/100 (19%)
RRM_TRA2 117..196 CDD:409798 24/86 (28%)
Linker 193..230 7/44 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 17/74 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1765
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.