Protein Alignment Saf-B and srp1

DIOPT Version :10

• Sequence 1: NP_733041.2
• Gene: Saf-B / 42958
• FlyBaseID: FBgn0039229
• Length: 928
• Species: Drosophila melanogaster
• Sequence 2: NP_596398.1
• Gene: srp1 / 2539818
• PomBaseID: SPBC11C11.08
• Length: 275
• Species: Schizosaccharomyces pombe
• Alignment Length: 316
• Identity: 84/316 - (26%)
• Similarity: 126/316 - (39%)
• Gaps: 63/316 - (19%)

  Fly   312 RNLWVSGLSTLTRASDLKAIFSKFGKVIGAKV-VTNTRTPGTRCYGYVTMSSSADASRCIENLHR 375
            |.|:|:|.....||.:|...|..||.:|...: :..|||  :|.:.:|....|.||    |:.:
pombe     7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRT--SRPFAFVEYEDSRDA----EDAY- 64

  Fly   376 TELHGRIISVERTKNEIGGSLNSKEGKGKAPGDAGNKKKEDDSGKKSGSGKGSSSNSGDDKKGGD 440
            .|:|||  .:||.    ||.|..:..|...|...|:|:                  .|..::||.
pombe    65 YEVHGR--RLERG----GGVLRVEWAKQPPPSGPGSKR------------------GGRRERGGR 105

  Fly   441 GNGDSKSVGGDLKRDGKESNRARSRR--NDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDV 503
            .:|||    |.|:......:.||||.  ||:|     |..|....|.||...|.|.|| |:| |.
pombe   106 VHGDS----GRLRSRSPSPHEARSRSPYNDER-----SDRRSMSPRYRSRSRSPDGRS-RSP-DY 159

  Fly   504 DREIQQRQRERERRQREMLSY--QKIREERERQ-RLRERERELREEERRRREARERQRIEEERLQ 565
            ||    |..:|..|....:|:  ||...|.|.: .:...:.::.|...:.....|:|........
pombe   160 DR----RSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEKSGTEVEQQSAPNSNGN 220

  Fly   566 EERRKLAVERERLEREKAELLRMERERQKLEREKIELERLELKRQQMKIMESRDDP 621
            ||...|         |.......::|..|.|...:..|:.|  :.|.::..:.:.|
pombe   221 EEVNNL---------EPVGQNESKQEPPKEENSNVSQEQPE--QAQPEVSAASEQP 265

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Saf-B	NP_733041.2	SAP	11..42	CDD:460424
		2A1904	<16..>270	CDD:273344
		RRM_SF	311..386	CDD:473069	24/74 (32%)
		SWIRM-assoc_1	<588..618	CDD:465142	6/29 (21%)
srp1	NP_596398.1	RRM_Srp1p_like	8..85	CDD:240913	28/89 (31%)