DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and AT1G44478

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_175089.1 Gene:AT1G44478 / 841030 AraportID:AT1G44478 Length:193 Species:Arabidopsis thaliana


Alignment Length:200 Identity:55/200 - (27%)
Similarity:78/200 - (39%) Gaps:59/200 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 LKGCEVIRDRK--------------TGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIHVDFS 316
            ||||.....:|              :|||: |.|:..:          .||...||||:|||.|:
plant    12 LKGCVFQNVQKGFIAQTGDPTGTGTSGDSI-YRFLHGD----------HMDGTFIDDRKIHVGFN 65

  Fly   317 QSVSKV---TWR-----GKGRGIEGDYRKLDFNNLRDDKDHRKPNN----GRSRTEDHKERNRTE 369
            ||..|:   .||     ||.. :.....|.:......:|.||:.::    ||.|   |.:...||
plant    66 QSSFKIWRQVWRKDSQHGKDH-VAKSPEKRELRRHGSEKIHRRSSHGYGEGRKR---HGDERYTE 126

  Fly   370 DFRNRMSSAERRKAREQRHQEQSERDVRKNLQRRTRSKEKDEKSVYRSKKSQNESVRENSNRERN 434
            |      .|.:...|.|..:|         |:|....|...||.:.|.:|   |.||..:..|:.
plant   127 D------KAGKYDGRRQEFRE---------LERVFNDKLSKEKKLQREEK---EIVRMMNTEEKY 173

  Fly   435 RNEKR 439
            ..:||
plant   174 AAKKR 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902
RRM_PPIL4 237..319 CDD:409681 21/66 (32%)
PRK12678 344..>510 CDD:237171 26/99 (26%)
U2AF_lg 467..>572 CDD:273727
AT1G44478NP_175089.1 cyclophilin <14..>61 CDD:469651 14/57 (25%)
Blue background indicates that the domain is not in the aligned region.

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