DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and ROC2

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_191166.1 Gene:ROC2 / 824773 AraportID:AT3G56070 Length:176 Species:Arabidopsis thaliana


Alignment Length:173 Identity:57/173 - (32%)
Similarity:85/173 - (49%) Gaps:29/173 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GDLTVDLFISERPIACLNFLKLC----------RLKYYNFNLFHTVQQGFIAQTGD-PSGAGDGG 63
            |.:.::||....|....||..||          :..:|..:.||.:..||:.|.|| ..|.|.||
plant    18 GRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGG 82

  Fly    64 SSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLDGNHCVIGE 128
            .||:|      .:|.:..|  |:.|:..|:||:.::|.|..|||||:.. |..:.|||.|.|.|:
plant    83 ESIYG------SKFEDENF--KLKHTGPGILSMANSGPNTNGSQFFICT-EKTSWLDGKHVVFGK 138

  Fly   129 VVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLED--PFPNP 169
            ||:|:.|::.:.| :..|...|      :..||:||  ...||
plant   139 VVDGYNVVKAMED-VGSDMGNP------SERVVIEDCGELKNP 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 55/171 (32%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
ROC2NP_191166.1 cyclophilin_ABH_like 4..169 CDD:238907 55/166 (33%)
Blue background indicates that the domain is not in the aligned region.

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