DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and SQN

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_565381.1 Gene:SQN / 816074 AraportID:AT2G15790 Length:361 Species:Arabidopsis thaliana


Alignment Length:394 Identity:95/394 - (24%)
Similarity:155/394 - (39%) Gaps:105/394 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GDLTVDLFISERPIACLNFLKLCRLK-----------YYNFNLFHTVQQGFIAQTGDPS-GAGDG 62
            |.:.::|:....|....||..||..:           :|..|.||.|.:||:.|.||.| ..|.|
plant    18 GRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTG 82

  Fly    63 GSSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLDGNHCVIG 127
            |.||:|:      :|.:..|  ::.|...||||:.::|.|..|||||:|. ...:.|||.|.|.|
plant    83 GESIYGL------KFDDENF--ELKHERKGMLSMANSGPNTNGSQFFITT-TRTSHLDGKHVVFG 138

  Fly   128 EVVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLKNGRIA 192
            .|.:|..|:|.:....:::...|.||      ||:.|....|.|      :.....:..|:|.:.
plant   139 RVTKGMGVVRSIEHVSIEEQSCPSQD------VVIHDCGEIPEG------ADDGICDFFKDGDVY 191

  Fly   193 ADEDID-------------DTDGMTA------EEMQEMLAEREAKARATILEIVGDLPDAD---- 234
            .|..||             ..|.:.|      ::....:|.|:.:.....|:|..:....|    
plant   192 PDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEETS 256

  Fly   235 --MAPPENVLF----VCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKS 293
              :...::.:|    .|||              .||..||.          .|...|...::..:
plant   257 TALRKTKSQIFTNSAACKL--------------KFGDAKGA----------LLDTEFAMRDEDNN 297

  Fly   294 CEA------AYFKMDNVLIDDRRIHVDFSQSVSK-VTWRGKGRGIEGDY----RKLDFNNLRDDK 347
            .:|      ||..::||   |..     ::|:.| :.:.....||:.:|    :|:.|.:..:.|
plant   298 VKALFRQGQAYMALNNV---DAA-----AESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKK 354

  Fly   348 DHRK 351
            .:||
plant   355 QYRK 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 55/170 (32%)
RRM_PPIL4 237..319 CDD:409681 16/91 (18%)
PRK12678 344..>510 CDD:237171 3/8 (38%)
U2AF_lg 467..>572 CDD:273727
SQNNP_565381.1 cyclophilin_ABH_like 4..171 CDD:238907 55/167 (33%)
TPR 213..>332 CDD:440225 25/150 (17%)
TPR repeat 263..293 CDD:276809 10/53 (19%)
TPR repeat 298..326 CDD:276809 8/35 (23%)
Blue background indicates that the domain is not in the aligned region.

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