DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and CG3511

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_611935.1 Gene:CG3511 / 37926 FlyBaseID:FBgn0035027 Length:637 Species:Drosophila melanogaster


Alignment Length:158 Identity:64/158 - (40%)
Similarity:88/158 - (55%) Gaps:13/158 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFIAQTGDPSGAGDGGSSI 66
            :||:.||.||:.:.||..|.|....||....:..|||.::||.|.:||:.|||||:|.|.||.||
  Fly   483 NVVLHTTKGDIHMRLFFKEVPKTVENFCVHAKNGYYNGHIFHRVIKGFMVQTGDPTGTGTGGKSI 547

  Fly    67 WGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTS--LDGNHCVIGEV 129
            ||       ..|:.||:|.:.|.....:|:.:||.|..|||||:|:   |.:  ||..|.|.|.|
  Fly   548 WG-------SDFKDEFVPSLKHDRPYTVSMANAGPNTNGSQFFITV---LPTPWLDNKHTVFGRV 602

  Fly   130 VEGHEVLRKL-NDAIVDDSFRPYQDIRI 156
            ..|.||:..: |......:.:||.||:|
  Fly   603 YRGMEVVLNICNSKANPKTDKPYDDIKI 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 63/156 (40%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
CG3511NP_611935.1 WD40 repeat 85..122 CDD:293791
WD40 <94..310 CDD:441893
WD40 repeat 128..176 CDD:293791
WD40 repeat 181..210 CDD:293791
WD40 repeat 218..268 CDD:293791
WD40 repeat 275..311 CDD:293791
cyclophilin_WD40 485..633 CDD:238908 63/156 (40%)
Blue background indicates that the domain is not in the aligned region.

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