DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5808 and Ppie

DIOPT Version :9

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001382655.1 Gene:Ppie / 298508 RGDID:1311411 Length:301 Species:Rattus norvegicus


Alignment Length:139 Identity:50/139 - (35%)
Similarity:75/139 - (53%) Gaps:14/139 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 PIACLNFLKLC-RLKYYNF--NLFHTVQQGFIAQTGD-PSGAGDGGSSIWGVVEGPQKRFFEAEF 82
            |:...||..|| ..|.:.|  :.||.:...|:.|.|| .:..|.||.||:|      |:|.:..|
  Rat   166 PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG------KKFDDENF 224

  Fly    83 LPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLDGNHCVIGEVVEGHEVLRKLNDAIVDDS 147
            :  :.|:..|:||:.::|.|..|||||||. :....|||.|.|.||:.:|.:|||:: :|.....
  Rat   225 I--LKHTGPGLLSMANSGPNTNGSQFFLTC-DKTDWLDGKHVVFGEITDGLDVLRQI-EAQGSKD 285

  Fly   148 FRPYQDIRI 156
            .:|.|.:.|
  Rat   286 GKPKQKVII 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 50/139 (36%)
RRM <237..445 CDD:223796
RRM_PPIL4 237..319 CDD:240681
PpieNP_001382655.1 RRM_PPIE 8..82 CDD:409783
cyclophilin_ABH_like 140..298 CDD:238907 50/139 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0652
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.